myRT

myRT report for GCA_001582315.1_ASM158231v1

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Seq: KQ973480.1 Legionella pneumophila strain ICDC-LP002 genomic scaffold Scaffold5, whole genome shotgun sequence (196875 bp)
Overview 1 RT 1: 45011-49916 bp Neighborhood of RT #1 [45011, 50464] conj_TOL_TraD RVT-Retrons DegQ Phage_int_SAM_2 Feature: gene Location: 45011-45340 bp Feature: gene Location: 45337-47271 bp Feature: domain Description: conj_TOL_TraD Location: 45355-47263 bp Feature: domain Description: conj_TOL_TraD Location: 45355-47263 bp Feature: gene Location: 47453-49078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47582-48185 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47582-481 85 bp Feature: domain Description: DegQ Location: 48518-49049 bp Feature: domain Description: DegQ Location: 4851 8-49049 bp Feature: gene Location: 49407-49634 bp Feature: gene Location: 49655-50464 bp Feature: domain Description: Phage_int_SAM_2 Location: 49709-49916 bp Feature: domain Description: Phage_int_SAM_2 Location: 49709-4991 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_TOL_TraD (TIGR03754), RVT-Retrons, DegQ (pfam08181), Phage_int_SAM_2 (pfam12834)

Seq: LAXY01000009.1 Legionella pneumophila strain ICDC-LP002 Scaffold8_1, whole genome shotgun sequence (155153 bp)
Overview 1 RT 1: 2939-6509 bp 2 RT 2: 131123-134128 bp Neighborhood of RT #1 [2939, 6509] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #2 [131123, 134128] Ubox RVT-UG18 Feature: gene Location: 2939-3106 bp Feature: gene Location: 3157-3450 bp Feature: domain Description: InsE Location: 3169-3430 bp Feature: domain Description: InsE Location: 3169-3430 bp Feature: gene Location: 3981-5225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4185-4842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4185-4842 bp Feature: domain Description: GIIM Note: maturase Location: 4923-5139 bp Feature: domain Description: GIIM Note: maturase Location: 492 3-5139 bp Feature: gene Location: 5262-6200 bp Feature: domain Description: PHA02517 Location: 5388-6174 bp Feature: domain Description: PHA02 517 Location: 5388-6174 bp Feature: gene Location: 6312-6509 bp Feature: gene Location: 131123-131500 bp Feature: gene Location: 131511-132140 bp Feature: domain Description: Ubox Location: 131673-131805 bp Feature: domain Description: Ubox Location: 131673-131805 bp Feature: gene Location: 132576-132872 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 132588-132801 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 132 588-132 801 bp Feature: gene Location: 132996-133133 bp Feature: gene Location: 133187-134128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Ubox (smart00504), RVT-UG18