myRT

myRT report for GCA_001582385.1_ASM158238v1

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Seq: KQ973487.1 Legionella pneumophila strain SH135 genomic scaffold Scaffold15, whole genome shotgun sequence (94451 bp)
Overview 1 RT 1: 944-5760 bp Neighborhood of RT #1 [944, 5891] NTP-PPase_MazG_Cterm Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 RVT_N RVT-GII GIIM Tra_M Feature: gene Location: 944-1321 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 971-1307 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 971 -1 307 bp Feature: gene Location: 1627-3078 bp Feature: domain Description: Tnp_DNA_bind Location: 1666-1834 bp Feature: domain Description: Tnp_DNA_bind Location: 1 666-1 834 bp Feature: domain Description: DDE_Tnp_1 Location: 2491-2785 bp Feature: domain Description: DDE_Tnp_1 Location: 2491 -2785 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2791-3070 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2791 -3070 bp Feature: gene Location: 3149-4669 bp Feature: RT Description: RVT_N Location: 3206-3449 bp Feature: RT Description: RVT_N Location: 3206-3449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3494-4118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3494-41 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 4169-4403 bp Feature: domain Description: GIIM Note: maturase Location: 41 69-4403 bp Feature: gene Location: 4905-5057 bp Feature: gene Location: 5517-5891 bp Feature: domain Description: Tra_M Location: 5565-5760 bp Feature: domain Description: Tra_M Location: 5565-5760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Tra_M (pfam05261), NTP-PPase_MazG_Cterm (cd11529)

Seq: LAYB01000029.1 Legionella pneumophila strain SH135 Scaffold25_1, whole genome shotgun sequence (49154 bp)
Overview 1 RT 1: 1224-6677 bp Neighborhood of RT #1 [1224, 6677] Phage_int_SAM_2 RVT-Retrons Trypsin_2 conj_TOL_TraD Feature: gene Location: 1224-2030 bp Feature: domain Description: Phage_int_SAM_2 Location: 1275-1482 bp Feature: domain Description: Phage_int_SAM_2 Location: 12 75-1482 bp Feature: gene Location: 2054-2281 bp Feature: gene Location: 2610-4235 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2739-3342 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 739-3342 bp Feature: domain Description: Trypsin_2 Location: 3726-4146 bp Feature: domain Description: Trypsin_2 Location: 372 6-4146 bp Feature: gene Location: 4417-6351 bp Feature: domain Description: conj_TOL_TraD Location: 4435-6343 bp Feature: domain Description: conj_TOL_TraD Location: 4435-6343 bp Feature: gene Location: 6348-6677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), RVT-Retrons, Trypsin_2 (pfam13365), conj_TOL_TraD (TIGR03754)

Seq: LAYB01000044.1 Legionella pneumophila strain SH135 Scaffold40_1, whole genome shotgun sequence (14545 bp)
Overview 1 RT 1: 7025-10811 bp Neighborhood of RT #1 [7025, 10813] RVT_N RVT-GII GIIM YafQ_toxin Feature: gene Location: 7025-7513 bp Feature: gene Location: 7568-8026 bp Feature: gene Location: 8275-9834 bp Feature: RT Description: RVT_N Location: 8353-8593 bp Feature: RT Description: RVT_N Location: 83 53 -8593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8641-9265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8641-9265 bp Feature: domain Description: GIIM Note: maturase Location: 9319-9550 bp Feature: domain Description: GIIM Note: maturase Location: 93 19-9550 bp Feature: gene Location: 9852-10181 bp Feature: gene Location: 10616-10813 bp Feature: domain Description: YafQ_toxin Location: 10622-10811 bp Feature: domain Description: YafQ_toxin Location: 10622-10811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafQ_toxin (pfam15738), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)