myRT

myRT report for GCA_001582555.1_ASM158255v1

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Seq: LBAG01000007.1 Legionella pneumophila strain TL-12 Scaffold6_1, whole genome shotgun sequence (194356 bp)
Overview 1 RT 1: 146411-151864 bp Neighborhood of RT #1 [146411, 151864] Phage_int_SAM_2 RVT-Retrons DegQ conj_TOL_TraD Feature: gene Location: 146411-147217 bp Feature: domain Description: Phage_int_SAM_2 Location: 146462-146669 bp Feature: domain Description: Phage_int_SAM_2 Location: 1 46462-1 46669 bp Feature: gene Location: 147241-147468 bp Feature: gene Location: 147797-149422 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147926-148529 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 47926-1 48529 bp Feature: domain Description: DegQ Location: 148862-149393 bp Feature: domain Description: DegQ Location: 1 48862-1 49393 bp Feature: gene Location: 149604-151538 bp Feature: domain Description: conj_TOL_TraD Location: 149622-151530 bp Feature: domain Description: conj_TOL_TraD Location: 1 49622-1 51 530 bp Feature: gene Location: 151535-151864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), RVT-Retrons, DegQ (pfam08181), conj_TOL_TraD (TIGR03754)

Seq: LBAG01000012.1 Legionella pneumophila strain TL-12 Scaffold10_1, whole genome shotgun sequence (146930 bp)
Overview 1 RT 1: 18965-21970 bp Neighborhood of RT #1 [18965, 21970] RVT-UG18 Ubox Feature: gene Location: 18965-19906 bp Feature: gene Location: 19960-20097 bp Feature: gene Location: 20221-20517 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 20233-20446 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2 02 33-2 0446 bp Feature: gene Location: 20953-21582 bp Feature: domain Description: Ubox Location: 21115-21247 bp Feature: domain Description: Ubox Location: 2 1115-2 12 47 bp Feature: gene Location: 21593-21970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18, Ubox (smart00504)

Seq: LBAG01000017.1 Legionella pneumophila strain TL-12 Scaffold14_1, whole genome shotgun sequence (95435 bp)
Overview 1 RT 1: 123-2734 bp Neighborhood of RT #1 [123, 2865] RVT_N RVT-GII GIIM Tra_M Feature: gene Location: 123-1643 bp Feature: domain Description: RVT_N Location: 180-423 bp Feature: domain Description: RVT_N Location: 180-423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468-1092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468-1092 bp Feature: domain Description: GIIM Note: maturase Location: 1143-1377 bp Feature: domain Description: GIIM Note: maturase Location: 1143 -13 77 bp Feature: gene Location: 1879-2031 bp Feature: gene Location: 2491-2865 bp Feature: domain Description: Tra_M Location: 2539-2734 bp Feature: domain Description: Tra_M Location: 253 9-273 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Tra_M (pfam05261)

Seq: LBAG01000026.1 Legionella pneumophila strain TL-12 Scaffold22_1, whole genome shotgun sequence (24318 bp)
Overview 1 RT 1: 15581-20481 bp Neighborhood of RT #1 [15581, 20966] RVT_N RVT-GII GIIM TraA_Ti Feature: gene Location: 15581-15787 bp Feature: gene Location: 15790-15966 bp Feature: gene Location: 16043-17530 bp Feature: domain Description: RVT_N Location: 16097-16340 bp Feature: domain Description: RVT_N Location: 16097-1634 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16385-17042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16385-1704 2 bp Feature: domain Description: GIIM Note: maturase Location: 17108-17342 bp Feature: domain Description: GIIM Note: maturase Location: 17108-1734 2 bp Feature: gene Location: 17573-17701 bp Feature: gene Location: 18288-20966 bp Feature: domain Description: TraA_Ti Location: 18318-20481 bp Feature: domain Description: TraA_Ti Location: 18318-204 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraA_Ti (TIGR02768)

Seq: LBAG01000031.1 Legionella pneumophila strain TL-12 Scaffold27_1, whole genome shotgun sequence (5272 bp)
Overview 1 RT 1: 2944-5144 bp Neighborhood of RT #1 [2944, 5230] InsE RVT-GII GIIM Feature: gene Location: 2944-3111 bp Feature: gene Location: 3162-3455 bp Feature: domain Description: InsE Location: 3174-3435 bp Feature: domain Description: InsE Location: 3174-3435 bp Feature: gene Location: 3986-5230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4190-4847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4190-4847 bp Feature: domain Description: GIIM Note: maturase Location: 4928-5144 bp Feature: domain Description: GIIM Note: maturase Location: 4928-5 144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388)