myRT

myRT report for GCA_001583455.1_ASM158345v1

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Seq: LTCZ01000330.1 Rhodococcus sp. LB1 contig_396, whole genome shotgun sequence (2311 bp)
Overview 1 RT 1: 114-1431 bp Neighborhood of RT #1 [114, 1610] RVT_N RVT-GII GIIM Feature: gene Location: 114-1610 bp Feature: RT Description: RVT_N Location: 186-423 bp Feature: RT Description: RVT_N Location: 1 86-423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-1143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-1 1 43 bp Feature: domain Description: GIIM Note: maturase Location: 1200-1431 bp Feature: domain Description: GIIM Note: maturase Location: 1 200-1 431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LTCZ01000007.1 Rhodococcus sp. LB1 contig_104, whole genome shotgun sequence (30006 bp)
Overview 1 RT 1: 185-2771 bp Neighborhood of RT #1 [185, 2771] RVT-GII GIIM Feature: gene Location: 185-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1199 bp Feature: domain Description: GIIM Note: maturase Location: 1274-1502 bp Feature: domain Description: GIIM Note: maturase Location: 12 74-1502 bp Feature: gene Location: 2218-2514 bp Feature: gene Location: 2544-2771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LTCZ01000441.1 Rhodococcus sp. LB1 contig_92, whole genome shotgun sequence (122618 bp)
Overview 1 RT 1: 13937-18433 bp Neighborhood of RT #1 [13937, 18438] NfsA_FRP SDR_c RVT-Retrons TIGR00004 GlnQ Feature: gene Location: 13937-14764 bp Feature: domain Description: NfsA_FRP Location: 14027-14687 bp Feature: domain Description: NfsA_FRP Location: 14027-14687 bp Feature: gene Location: 14946-15692 bp Feature: domain Description: SDR_c Location: 14970-15633 bp Feature: domain Description: SDR_c Location: 14970-1563 3 bp Feature: gene Location: 15705-16925 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16089-16683 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16089-16683 bp Feature: gene Location: 17228-17611 bp Feature: domain Description: TIGR00004 Location: 17240-17597 bp Feature: domain Description: TIGR00004 Location: 17240-17597 bp Feature: gene Location: 17674-18438 bp Feature: domain Description: GlnQ Location: 17689-18433 bp Feature: domain Description: GlnQ Location: 17689-1843 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NfsA_FRP, SDR_c (cd05233), RVT-Retrons, TIGR00004 (reactive intermediate/imine deaminase), GlnQ (COG1126)

Seq: LTCZ01000425.1 Rhodococcus sp. LB1 contig_78, whole genome shotgun sequence (35423 bp)
Overview 1 RT 1: 31676-35018 bp Neighborhood of RT #1 [31676, 35152] PRK07232 Whib RVT-GII GIIM Feature: gene Location: 31676-32670 bp Feature: domain Description: PRK07232 Location: 31754-32273 bp Feature: domain Description: PRK07232 Location: 31754 -32273 bp Feature: gene Location: 32785-33102 bp Feature: domain Description: Whib Location: 32842-33049 bp Feature: domain Description: Whib Location: 3284 2-3304 9 bp Feature: gene Location: 33770-35152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34091-34721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 091-34 721 bp Feature: domain Description: GIIM Note: maturase Location: 34811-35018 bp Feature: domain Description: GIIM Note: maturase Location: 34 811-35018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), Whib (pfam02467), RVT-GII, GIIM (pfam08388)