myRT

myRT report for GCA_001584095.1_ASM158409v1

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Seq: LONH01000259.1 Bacillus cereus strain FSL W8-0520 contig_39, whole genome shotgun sequence (35684 bp)
Overview 1 RT 1: 206-5433 bp Neighborhood of RT #1 [206, 5438] COG4712 RVT-GII beta_clamp Feature: gene Location: 206-583 bp Feature: gene Location: 624-980 bp Ori: KXY94070.1 Feature: domain Description: COG4712 Location: 633-975 bp Feature: domain Description: COG471 2 Location: 633-975 bp Feature: gene Location: 1742-3640 bp Ori: KXY94100.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2057-2759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2057-2759 bp Feature: gene Location: 3718-4245 bp Feature: gene Location: 4326-5438 bp Ori: KXY94072.1 Feature: domain Description: beta_clamp Location: 4329-5433 bp Feature: domain Description: beta_clamp Location: 4329-5433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4712 (Uncharacterized protein ), RVT-GII, beta_clamp (cl29549)

Seq: LONH01000265.1 Bacillus cereus strain FSL W8-0520 contig_44, whole genome shotgun sequence (32732 bp)
Overview 1 RT 1: 14153-23712 bp Neighborhood of RT #1 [14153, 23712] DEXDc RVT_N RVT-GII GIIM HNH RVT-GII HNHc Feature: gene Location: 14153-14344 bp Feature: gene Location: 14404-16989 bp Ori: KXY93365.1 Feature: domain Description: DEXDc Location: 15181-16135 bp Feature: domain Description: DEXDc Location: 15181-16135 bp Feature: gene Location: 17561-19372 bp Ori: KXY93366.1 Feature: domain Description: RVT_N Location: 17615-17861 bp Feature: domain Description: RVT_N Location: 17615-17861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17915-18569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17915-18569 bp Feature: domain Description: GIIM Note: maturase Location: 18632-18866 bp Feature: domain Description: GIIM Note: maturase Location: 18632 -18866 bp Feature: domain Description: HNH Note: nucleases Location: 19106-19241 bp Feature: domain Description: HNH Note: nucleases Location: 19106-192 41 bp Feature: gene Location: 20236-22122 bp Ori: KXY93378.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20548-21286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0548-2 12 86 bp Feature: domain Description: HNHc Note: nucleases Location: 21865-22012 bp Feature: domain Description: HNHc Note: nucleases Location: 2 1865-2 2 012 bp Feature: gene Location: 22242-22997 bp Feature: gene Location: 23014-23712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXDc (smart00487), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HNHc (smart00507)

Seq: LONH01000090.1 Bacillus cereus strain FSL W8-0520 contig_18, whole genome shotgun sequence (73590 bp)
Overview 1 RT 1: 17764-27470 bp Neighborhood of RT #1 [17764, 27470] TraC-F-type RVT-GII HNHc TraC-F-type Feature: gene Location: 17764-18678 bp Feature: gene Location: 18681-19649 bp Feature: domain Description: TraC-F-type Location: 19101-19575 bp Feature: domain Description: TraC-F-type Location: 19101-19575 bp Feature: gene Location: 20368-22200 bp Ori: KXZ01147.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20668-21373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20668-213 73 bp Feature: domain Description: HNHc Note: nucleases Location: 21952-22084 bp Feature: domain Description: HNHc Note: nucleases Location: 21952-22084 bp Feature: gene Location: 22317-23459 bp Feature: domain Description: TraC-F-type Location: 22320-23298 bp Feature: domain Description: TraC-F-type Location: 223 20-23 298 bp Feature: gene Location: 23490-27470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507)

Seq: LONH01000181.1 Bacillus cereus strain FSL W8-0520 contig_27, whole genome shotgun sequence (49968 bp)
Overview 1 RT 1: 4342-13373 bp Neighborhood of RT #1 [4342, 13373] rpsA nuc_hydro RVT_N RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma Feature: gene Location: 4342-5325 bp Ori: KXY97555.1 Feature: domain Description: rpsA Location: 4609-5146 bp Feature: domain Description: rpsA Location: 4 609-514 6 bp Feature: gene Location: 5940-6890 bp Ori: KXY97556.1 Feature: domain Description: nuc_hydro Location: 5955-6861 bp Feature: domain Description: nuc_hydro Location: 5955-6861 bp Feature: gene Location: 7610-9256 bp Ori: KXY97557.1 Feature: domain Description: RVT_N Location: 7652-7889 bp Feature: domain Description: RVT_N Location: 7652-7889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7943-8603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794 3-8603 bp Feature: domain Description: GIIM Note: maturase Location: 8672-8903 bp Feature: domain Description: GIIM Note: maturase Location: 8672-8903 bp Feature: gene Location: 9469-12969 bp Ori: KXY97558.1 Feature: domain Description: TraG-D_C Location: 11086-11446 bp Feature: domain Description: TraG-D_C Location: 11086-114 4 6 bp Feature: domain Description: Ftsk_gamma Location: 11854-12031 bp Feature: domain Description: Ftsk_gamma Location: 11854 -12031 bp Feature: domain Description: Ftsk_gamma Location: 12163-12298 bp Feature: domain Description: Ftsk_gamma Location: 12163-12298 bp Feature: gene Location: 12987-13373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), nuc_hydro (cl00226), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), Ftsk_gamma (smart00843)

Seq: LONH01000058.1 Bacillus cereus strain FSL W8-0520 contig_150, whole genome shotgun sequence (6031 bp)
Overview 1 RT 1: 1-5881 bp Neighborhood of RT #1 [1, 5928] Transposase_22 Tnp_22_dsRBD L1-EN RVT-UNC DUF1725 Feature: gene Location: 1-302 bp Feature: gene Location: 1477-2037 bp Ori: KXZ01564.1 Feature: domain Description: Transposase_22 Location: 1486-1777 bp Feature: domain Description: Transposase_22 Location: 1486-1777 bp Feature: domain Description: Tnp_22_dsRBD Location: 1786-1978 bp Feature: domain Description: Tnp_22_dsRBD Location: 1786-1978 bp Feature: gene Location: 2602-5928 bp Ori: KXZ01565.1 Feature: domain Description: L1-EN Location: 2617-2812 bp Feature: domain Description: L1-EN Location: 2617-2812 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3685-4342 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3685 -4342 bp Feature: domain Description: DUF1725 Location: 5827-5881 bp Feature: domain Description: DUF1725 Location: 5 827-5 881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_22 (pfam02994), Tnp_22_dsRBD (pfam17490), L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), DUF1725 (pfam08333)