myRT

myRT report for GCA_001584265.1_ASM158426v1

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Seq: LTYK01000059.1 Vibrio alginolyticus strain ANC4-19 contig_059, whole genome shotgun sequence (26214 bp)
Overview 1 RT 1: 20027-25519 bp Neighborhood of RT #1 [20027, 25519] NhaC RVT_N RVT-GII GIIM Feature: gene Location: 20027-21550 bp Feature: domain Description: NhaC Location: 20045-21488 bp Feature: domain Description: NhaC Location: 20045-21 488 bp Feature: gene Location: 21764-21949 bp Feature: gene Location: 22430-23902 bp Feature: RT Description: RVT_N Location: 22478-22721 bp Feature: RT Description: RVT_N Location: 22478-22721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22766-23393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22766-23393 bp Feature: domain Description: GIIM Note: maturase Location: 23453-23678 bp Feature: domain Description: GIIM Note: maturase Location: 23453-23678 bp Feature: gene Location: 24560-24826 bp Feature: gene Location: 25058-25519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NhaC (COG1757), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LTYK01000037.1 Vibrio alginolyticus strain ANC4-19 contig_037, whole genome shotgun sequence (53940 bp)
Overview 1 RT 1: 43770-50058 bp Neighborhood of RT #1 [43770, 50058] groES groEL RVT_N RVT-GII GIIM HNHc Feature: gene Location: 43770-44060 bp Feature: domain Description: groES Location: 43773-44058 bp Feature: domain Description: groES Location: 43773-44058 bp Feature: gene Location: 44138-45784 bp Feature: domain Description: groEL Location: 44144-45764 bp Feature: domain Description: groEL Location: 44144-45764 bp Feature: gene Location: 47030-48718 bp Feature: RT Description: RVT_N Location: 47081-47324 bp Feature: RT Description: RVT_N Location: 47081-4732 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47369-48014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47369-48014 bp Feature: domain Description: GIIM Note: maturase Location: 48065-48299 bp Feature: domain Description: GIIM Note: maturase Location: 48065-482 99 bp Feature: domain Description: HNHc Note: nucleases Location: 48518-48677 bp Feature: domain Description: HNHc Note: nucleases Location: 48518-48677 bp Feature: gene Location: 48754-49056 bp Feature: gene Location: 49495-50058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LTYK01000073.1 Vibrio alginolyticus strain ANC4-19 contig_073, whole genome shotgun sequence (11870 bp)
Overview 1 RT 1: 5797-11405 bp Neighborhood of RT #1 [5797, 11590] Phage_AlpA RVT-Retrons SEL1 COG3950 TIGR02646 Feature: gene Location: 5797-6021 bp Feature: domain Description: Phage_AlpA Location: 5824-5968 bp Feature: domain Description: Phage_AlpA Location: 5824-5968 bp Feature: gene Location: 6229-7581 bp Feature: gene Location: 8251-9198 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8356-8953 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83 56-8953 bp Feature: gene Location: 9199-10815 bp Feature: domain Description: SEL1 Location: 9268-9343 bp Feature: domain Description: SEL1 Location: 9268-93 43 bp Feature: domain Description: COG3950 Location: 9382-10786 bp Feature: domain Description: COG3 950 Location: 93 82-10786 bp Feature: gene Location: 10799-11590 bp Feature: domain Description: TIGR02646 Location: 10871-11405 bp Feature: domain Description: TIGR02646 Location: 10871-11405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_AlpA (pfam05930), RVT-Retrons, SEL1 (smart00671), COG3950 (Predicted ATP-binding protein involved in virulence )

Seq: LTYK01000004.1 Vibrio alginolyticus strain ANC4-19 contig_004, whole genome shotgun sequence (227353 bp)
Overview 1 RT 1: 45038-50154 bp Neighborhood of RT #1 [45038, 50153] OmpR PTS-II-BC-glcB RVT_N RVT-GII GIIM DUF302 Feature: gene Location: 45038-45745 bp Feature: domain Description: OmpR Location: 45053-45725 bp Feature: domain Description: OmpR Location: 4 5053-4 5725 bp Feature: gene Location: 46059-47453 bp Feature: domain Description: PTS-II-BC-glcB Location: 46062-47445 bp Feature: domain Description: PTS-II-BC-glcB Location: 4 6062-4 74 4 5 bp Feature: gene Location: 48286-49758 bp Feature: RT Description: RVT_N Location: 48334-48577 bp Feature: RT Description: RVT_N Location: 4 8334 -4 8577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48622-49249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 8622-4 924 9 bp Feature: domain Description: GIIM Note: maturase Location: 49312-49534 bp Feature: domain Description: GIIM Note: maturase Location: 4 9312-4 9534 bp Feature: gene Location: 49674-49871 bp Feature: gene Location: 49869-50153 bp Feature: domain Description: DUF302 Location: 49941-50154 bp Feature: domain Description: DUF302 Location: 4 994 1-50154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), PTS-II-BC-glcB (TIGR02002), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF302 (pfam03625)