myRT

myRT report for GCA_001586765.1_ASM158676v1

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Seq: LQXW01000061.1 Pseudomonas sp. ABFPK NODE_64, whole genome shotgun sequence (5556 bp)
Overview 1 RT 1: 121-4720 bp Neighborhood of RT #1 [121, 4720] RVT-GII GIIM Rep_3 Feature: gene Location: 121-705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127-253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27-253 bp Feature: domain Description: GIIM Note: maturase Location: 310-523 bp Feature: domain Description: GIIM Note: maturase Location: 31 0-523 bp Feature: gene Location: 2500-3783 bp Ori: KYC15655.1 Feature: domain Description: Rep_3 Location: 2518-3148 bp Feature: domain Description: Rep_3 Location: 251 8-31 48 bp Feature: gene Location: 3791-4720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Rep_3 (pfam01051)

Seq: LQXW01000029.1 Pseudomonas sp. ABFPK NODE_35, whole genome shotgun sequence (40260 bp)
Overview 1 RT 1: 38395-40132 bp Neighborhood of RT #1 [38395, 40137] RVT-GII Feature: gene Location: 38395-38862 bp Feature: gene Location: 39355-40137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39637-40132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39637-40132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LQXW01000067.1 Pseudomonas sp. ABFPK NODE_7, whole genome shotgun sequence (234768 bp)
Overview 1 RT 1: 27255-34149 bp Neighborhood of RT #1 [27255, 34154] OmpR COG3907 RVT_N RVT-GII GIIM HNH groEL groES Feature: gene Location: 27255-27938 bp Ori: KYC15063.1 Feature: domain Description: OmpR Location: 27258-27921 bp Feature: domain Description: OmpR Location: 27258-27921 bp Feature: gene Location: 28122-28850 bp Ori: KYC15064.1 Feature: domain Description: COG3907 Location: 28143-28815 bp Feature: domain Description: COG3 907 Location: 28143 -28815 bp Feature: gene Location: 29474-30991 bp Ori: KYC15242.1 Feature: domain Description: RVT_N Location: 29477-29624 bp Feature: domain Description: RVT_N Location: 29477-29624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29672-30317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29672-3 03 17 bp Feature: domain Description: GIIM Note: maturase Location: 30368-30602 bp Feature: domain Description: GIIM Note: maturase Location: 3 03 68-3 0602 bp Feature: domain Description: HNH Note: nucleases Location: 30842-30980 bp Feature: domain Description: HNH Note: nucleases Location: 3 0842-3 0980 bp Feature: gene Location: 32172-33812 bp Ori: KYC15065.1 Gene: groEL Feature: domain Description: groEL Location: 32178-33795 bp Feature: domain Description: groEL Location: 3 2178-3 3 795 bp Feature: gene Location: 33861-34154 bp Ori: KYC15066.1 Feature: domain Description: groES Location: 33864-34149 bp Feature: domain Description: groES Location: 3 3 864-3 4149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), groEL (PRK12852), groES (PRK14533)

Seq: LQXW01000063.1 Pseudomonas sp. ABFPK NODE_66, whole genome shotgun sequence (2994 bp)
Overview 1 RT 1: 75-1725 bp Neighborhood of RT #1 [75, 1781] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 75-1781 bp Ori: KYC15650.1 Feature: domain Description: RVT_N Location: 132-375 bp Feature: domain Description: RVT_N Location: 132-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 20-1056 bp Feature: domain Description: YkfC Location: 1254-1359 bp Feature: domain Description: YkfC Location: 1254 -1359 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: LQXW01000069.1 Pseudomonas sp. ABFPK NODE_71, whole genome shotgun sequence (1858 bp)
Overview 1 RT 1: 78-1239 bp Neighborhood of RT #1 [78, 1322] RVT-GII GIIM Feature: gene Location: 78-1322 bp Ori: KYC15037.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282-939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282-939 bp Feature: domain Description: GIIM Note: maturase Location: 1017-1239 bp Feature: domain Description: GIIM Note: maturase Location: 1017-1239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LQXW01000089.1 Pseudomonas sp. ABFPK NODE_9, whole genome shotgun sequence (210808 bp)
Overview 1 RT 1: 183664-191415 bp Neighborhood of RT #1 [183664, 192044] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0389 SF2_C_SNF TPR Feature: gene Location: 183664-185100 bp Ori: KYC14121.1 Feature: domain Description: AdoMet_MTases Location: 183787-184156 bp Feature: domain Description: AdoMet_MTases Location: 183787-184156 bp Feature: gene Location: 185200-186204 bp Feature: domain Description: DEXHc_Snf Location: 185395-185638 bp Feature: domain Description: DEXHc_Snf Location: 185395-1856 38 bp Feature: gene Location: 186822-188540 bp Ori: KYC14122.1 Feature: domain Description: RVT_N Location: 186879-187116 bp Feature: domain Description: RVT_N Location: 186 879-187116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187167-187818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18716 7-187818 bp Feature: domain Description: GIIM Note: maturase Location: 187872-188103 bp Feature: domain Description: GIIM Note: maturase Location: 187872-188103 bp Feature: domain Description: HNHc Note: nucleases Location: 188337-188493 bp Feature: domain Description: HNHc Note: nucleases Location: 188337-188493 bp Feature: gene Location: 188623-189867 bp Feature: domain Description: KOG0389 Location: 188644-188767 bp Feature: domain Description: KOG0389 Location: 1886 44-18876 7 bp Feature: domain Description: SF2_C_SNF Location: 189313-189703 bp Feature: domain Description: SF2_C_SNF Location: 189313-189703 bp Feature: gene Location: 189912-192044 bp Ori: KYC14123.1 Feature: domain Description: TPR Location: 191211-191415 bp Feature: domain Description: TPR Location: 191211-191415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), TPR (smart00028)