myRT

myRT report for GCA_001587455.1_B4110

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Seq: LQYW01000149.1 Parageobacillus toebii strain B4110 NODE_282, whole genome shotgun sequence (100643 bp)
Overview 1 RT 1: 48292-50599 bp Neighborhood of RT #1 [48292, 50604] Avd_like RVT-DGRs holin_SPP1 Feature: gene Location: 48292-48627 bp Ori: KYD24628.1 Feature: domain Description: Avd_like Location: 48316-48622 bp Feature: domain Description: Avd_like Location: 4831 6-48622 bp Feature: gene Location: 48761-48892 bp Feature: gene Location: 48980-50053 bp Ori: KYD24630.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49190-49844 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 491 90-49844 bp Feature: gene Location: 50100-50381 bp Feature: gene Location: 50383-50604 bp Ori: KYD24632.1 Feature: domain Description: holin_SPP1 Location: 50386-50599 bp Feature: domain Description: holin_SPP1 Location: 50386-50599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, holin_SPP1 (TIGR01592)

Seq: LQYW01000033.1 Parageobacillus toebii strain B4110 NODE_36, whole genome shotgun sequence (29141 bp)
Overview 1 RT 1: 21752-27801 bp Neighborhood of RT #1 [21752, 27801] Mg_chelatase T_den_put_tspse RVT-CRISPR-like DUF4209 Feature: gene Location: 21752-21973 bp Ori: KYD31645.1 Feature: domain Description: Mg_chelatase Location: 21758-21926 bp Feature: domain Description: Mg_chelatase Location: 2 1758-2 192 6 bp Feature: gene Location: 22147-23001 bp Ori: KYD31646.1 Feature: domain Description: T_den_put_tspse Location: 22162-22996 bp Feature: domain Description: T_den_put_tspse Location: 2 2 162 -2 2 996 bp Feature: gene Location: 23385-24851 bp Ori: KYD31647.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 23685-24375 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 3685-2 4375 bp Feature: gene Location: 25386-27197 bp Ori: KYD31648.1 Feature: domain Description: DUF4209 Location: 26883-27147 bp Feature: domain Description: DUF42 09 Location: 2 6883-2 7147 bp Feature: gene Location: 27625-27801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mg_chelatase (pfam01078), T_den_put_tspse (TIGR01784), RVT-CRISPR, DUF4209 (pfam13910)

Seq: LQYW01000084.1 Parageobacillus toebii strain B4110 NODE_110, whole genome shotgun sequence (48764 bp)
Overview 1 RT 1: 14132-23565 bp Neighborhood of RT #1 [14132, 23570] PRK12389 gltB RVT-GII GIIM YgaE DppC Feature: gene Location: 14132-15427 bp Ori: KYD28116.1 Feature: domain Description: PRK12389 Location: 14135-15416 bp Feature: domain Description: PRK123 89 Location: 1413 5-15416 bp Feature: gene Location: 15632-20149 bp Ori: KYD28117.1 Feature: domain Description: gltB Location: 15725-19901 bp Feature: domain Description: gltB Location: 15725-19901 bp Feature: gene Location: 20223-21296 bp Ori: KYD28118.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20259-20850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20259-20850 bp Feature: domain Description: GIIM Note: maturase Location: 20901-21114 bp Feature: domain Description: GIIM Note: maturase Location: 20901-21114 bp Feature: gene Location: 21571-22632 bp Ori: KYD28119.1 Feature: domain Description: YgaE Location: 21574-22492 bp Feature: domain Description: YgaE Location: 21574-22492 bp Feature: gene Location: 22671-23570 bp Ori: KYD28120.1 Feature: domain Description: DppC Location: 22743-23565 bp Feature: domain Description: DppC Location: 22743 -23 565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12389 (glutamate-1-semialdehyde aminotransferase; Provisional), gltB (PRK11750), RVT-GII, GIIM (pfam08388), YgaE (COG4129), DppC (COG1173)

Seq: LQYW01000051.1 Parageobacillus toebii strain B4110 NODE_55, whole genome shotgun sequence (103753 bp)
Overview 1 RT 1: 100458-102483 bp Neighborhood of RT #1 [100458, 103277] Cas2_I_II_III Cas_Cas1 RVT-GII Feature: gene Location: 100458-100754 bp Ori: KYD30520.1 Feature: domain Description: Cas2_I_II_III Location: 100491-100719 bp Feature: domain Description: Cas2_I_II_III Location: 1004 91-100719 bp Feature: gene Location: 100708-101685 bp Ori: KYD30521.1 Feature: domain Description: Cas_Cas1 Location: 100714-101557 bp Feature: domain Description: Cas_Cas1 Location: 100714 -101557 bp Feature: gene Location: 101700-103277 bp Ori: KYD30522.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101910-102483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101910-1024 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-GII

Seq: LQYW01000150.1 Parageobacillus toebii strain B4110 NODE_283, whole genome shotgun sequence (6962 bp)
Overview 1 RT 1: 1159-6813 bp Neighborhood of RT #1 [1159, 6821] RNase_R smpB RVT-GII group_II_RT_mat LysM 3D Feature: gene Location: 1159-3450 bp Ori: KYD24493.1 Feature: domain Description: RNase_R Location: 1183-3283 bp Feature: domain Description: RNase_R Location: 1183-3283 bp Feature: gene Location: 3538-4005 bp Ori: KYD24494.1 Feature: domain Description: smpB Location: 3556-3991 bp Feature: domain Description: smpB Location: 35 5 6-3991 bp Feature: gene Location: 5222-5965 bp Ori: KYD24495.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5285-5486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 285 -5 486 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5504-5765 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5 5 04-5 765 bp Feature: gene Location: 6258-6821 bp Ori: KYD24496.1 Feature: domain Description: LysM Location: 6339-6465 bp Feature: domain Description: LysM Location: 6339-6465 bp Feature: domain Description: 3D Location: 6501-6813 bp Feature: domain Description: 3D Location: 65 01-6813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_R (TIGR02063), smpB (TIGR00086), RVT-GII, group_II_RT_mat (TIGR04416), LysM (smart00257), 3D (pfam06725)