myRT

myRT report for GCA_001588095.1_CFSAN033915_01.0

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Seq: LUIH01000125.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033915 CFSAN033915_contig0124, whole genome shotgun sequence (10318 bp)
Overview 1 RT 1: 114-4923 bp Neighborhood of RT #1 [114, 4928] RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 114-1076 bp Feature: gene Location: 1076-2011 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1187-1772 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 87-1 772 bp Feature: gene Location: 2813-4000 bp Feature: domain Description: PRK10473 Location: 2816-3992 bp Feature: domain Description: PRK1 0473 Location: 281 6-3992 bp Feature: gene Location: 3969-4928 bp Feature: domain Description: PRK10216 Location: 3972-4923 bp Feature: domain Description: PRK1 021 6 Location: 3972-4923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)

Seq: LUIH01000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033915 CFSAN033915_contig0139, whole genome shotgun sequence (7502 bp)
Overview 1 RT 1: 3950-7099 bp Neighborhood of RT #1 [3950, 7101] PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 3950-4381 bp Feature: domain Description: PRK10276 Location: 4001-4364 bp Feature: domain Description: PRK102 76 Location: 4001-4364 bp Feature: gene Location: 4936-5130 bp Feature: gene Location: 5242-6252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5248-5860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 48-5860 bp Feature: gene Location: 6404-6679 bp Feature: domain Description: InsA Location: 6410-6671 bp Feature: domain Description: InsA Location: 6410-6671 bp Feature: gene Location: 6598-7101 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6709-7099 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6709-7099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)