myRT

myRT report for GCA_001589195.1_Sce1.0

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Seq: JELX01001862.1 Sorangium cellulosum strain So0157-18 scaffold2466, whole genome shotgun sequence (18139 bp)
Overview 1 RT 1: 1620-9002 bp Neighborhood of RT #1 [1620, 9040] Glyco_hydro_26 Glyco_hydro_26 RVT-GII GDB1 SCP2 Feature: gene Location: 1620-1991 bp Feature: gene Location: 2462-4357 bp Feature: domain Description: Glyco_hydro_26 Location: 3296-3563 bp Feature: domain Description: Glyco_hydro_26 Location: 3296-3563 bp Feature: domain Description: Glyco_hydro_26 Location: 3755-3899 bp Feature: domain Description: Glyco_hydro_26 Location: 3755-3899 bp Feature: gene Location: 4556-5494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4559-5045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4559-5045 bp Feature: gene Location: 6698-8752 bp Feature: domain Description: GDB1 Location: 6752-8636 bp Feature: domain Description: GDB1 Location: 6752-8636 bp Feature: gene Location: 8774-9040 bp Feature: domain Description: SCP2 Location: 8783-9002 bp Feature: domain Description: SCP2 Location: 8783-9002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_26 (pfam02156), RVT-GII, GDB1 (COG3408), SCP2 (pfam02036)

Seq: JELX01004352.1 Sorangium cellulosum strain So0157-18 scaffold687, whole genome shotgun sequence (8877 bp)
Overview 1 RT 1: 1-5808 bp Neighborhood of RT #1 [1, 6329] PGRP FlgJ ExeA RVT-GII GIIM AAA_22 HTH_32 rve Feature: gene Location: 1-1454 bp Feature: domain Description: PGRP Location: 835-946 bp Feature: domain Description: PGRP Location: 835-946 bp Feature: domain Description: FlgJ Location: 1102-1447 bp Feature: domain Description: FlgJ Location: 1102 -1447 bp Feature: gene Location: 1935-2306 bp Feature: domain Description: ExeA Location: 1938-2265 bp Feature: domain Description: ExeA Location: 1938-2 2 65 bp Feature: gene Location: 2388-3560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2394-3102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 394-3102 bp Feature: domain Description: GIIM Note: maturase Location: 3177-3381 bp Feature: domain Description: GIIM Note: maturase Location: 3177-3381 bp Feature: gene Location: 4528-4974 bp Feature: domain Description: AAA_22 Location: 4672-4975 bp Feature: domain Description: AAA_2 2 Location: 4672 -4975 bp Feature: gene Location: 4971-6329 bp Feature: domain Description: HTH_32 Location: 5151-5379 bp Feature: domain Description: HTH_32 Location: 5151-5379 bp Feature: domain Description: rve Location: 5457-5808 bp Feature: domain Description: rve Location: 5457-5808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGRP (smart00701), FlgJ (COG1705), ExeA (COG3267), RVT-GII, GIIM (pfam08388), AAA_22 (pfam13401), HTH_32 (pfam13565), rve (pfam00665)

Seq: JELX01003705.1 Sorangium cellulosum strain So0157-18 scaffold4460, whole genome shotgun sequence (1383 bp)
Overview 1 RT 1: 857-1355 bp Neighborhood of RT #1 [857, 1383] RVT-GII Feature: gene Location: 857-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980-13 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JELX01000934.1 Sorangium cellulosum strain So0157-18 scaffold1435, whole genome shotgun sequence (11229 bp)
Overview 1 RT 1: 1-3242 bp Neighborhood of RT #1 [1, 3265] RVT-Retrons PAS_4 PAS_4 STAS_RsbR_RsbS_like Feature: gene Location: 1-1236 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 316-976 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 316-976 bp Feature: gene Location: 1299-1748 bp Feature: gene Location: 2087-3265 bp Feature: domain Description: PAS_4 Location: 2102-2195 bp Feature: domain Description: PAS_4 Location: 2102-2195 bp Feature: domain Description: PAS_4 Location: 2444-2765 bp Feature: domain Description: PAS_4 Location: 24 4 4 -2765 bp Feature: domain Description: STAS_RsbR_RsbS_like Location: 2918-3242 bp Feature: domain Description: STAS_RsbR_RsbS_like Location: 2918-324 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PAS_4 (pfam08448), STAS_RsbR_RsbS_like (cd07041)