myRT

myRT report for GCA_001589285.1_sce8312.1

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Seq: JEMA01001092.1 Sorangium cellulosum strain So0008-312 scaffold7822, whole genome shotgun sequence (6877 bp)
Overview 1 RT 1: 2326-6344 bp Neighborhood of RT #1 [2326, 6556] COG3950 MlaE RVT-GII GIIM Feature: gene Location: 2326-3657 bp Feature: domain Description: COG3950 Location: 2329-3403 bp Feature: domain Description: COG3950 Location: 2329-3403 bp Feature: gene Location: 4114-4869 bp Feature: domain Description: MlaE Location: 4126-4861 bp Feature: domain Description: MlaE Location: 41 26-4861 bp Feature: gene Location: 5180-6556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5438-6059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5438-6059 bp Feature: domain Description: GIIM Note: maturase Location: 6122-6344 bp Feature: domain Description: GIIM Note: maturase Location: 61 22-6344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), MlaE (pfam02405), RVT-GII, GIIM (pfam08388)

Seq: JEMA01000902.1 Sorangium cellulosum strain So0008-312 scaffold7267, whole genome shotgun sequence (11792 bp)
Overview 1 RT 1: 6171-11792 bp Neighborhood of RT #1 [6171, 11792] RVT-Retrons SWIM Feature: gene Location: 6171-6908 bp Feature: gene Location: 7279-7689 bp Feature: gene Location: 7729-9222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8290-8968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82 90-8968 bp Feature: gene Location: 9671-11584 bp Feature: domain Description: SWIM Location: 11198-11282 bp Feature: domain Description: SWIM Location: 11198-112 82 bp Feature: gene Location: 11581-11792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SWIM (pfam04434)

Seq: JEMA01000444.1 Sorangium cellulosum strain So0008-312 scaffold4232, whole genome shotgun sequence (68503 bp)
Overview 1 RT 1: 65559-68295 bp Neighborhood of RT #1 [65559, 68354] PRK06523 Cupin_6 AraC RVT-GII GIIM Feature: gene Location: 65559-66326 bp Feature: domain Description: PRK06523 Location: 65583-66318 bp Feature: domain Description: PRK06523 Location: 65583 -663 18 bp Feature: gene Location: 66501-67448 bp Feature: domain Description: Cupin_6 Location: 66507-67041 bp Feature: domain Description: Cupin_6 Location: 66507-67041 bp Feature: domain Description: AraC Location: 67053-67392 bp Feature: domain Description: AraC Location: 67053 -673 92 bp Feature: gene Location: 67563-68354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67572-68010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67572-68010 bp Feature: domain Description: GIIM Note: maturase Location: 68082-68295 bp Feature: domain Description: GIIM Note: maturase Location: 68082-68295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06523 (short chain dehydrogenase; Provisional), Cupin_6 (pfam12852), AraC (COG2207), RVT-GII, GIIM (pfam08388)

Seq: JEMA01000595.1 Sorangium cellulosum strain So0008-312 scaffold5626, whole genome shotgun sequence (12633 bp)
Overview 1 RT 1: 6151-12633 bp Neighborhood of RT #1 [6151, 12633] STKc_PknB_like HipB RVT-GII GIIM MdlB Feature: gene Location: 6151-7422 bp Feature: domain Description: STKc_PknB_like Location: 6184-6901 bp Feature: domain Description: STKc_PknB_like Location: 6184 -6901 bp Feature: gene Location: 7696-8151 bp Feature: domain Description: HipB Location: 7723-7960 bp Feature: domain Description: HipB Location: 7723-7960 bp Feature: gene Location: 8274-9494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8460-9093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 60-9093 bp Feature: domain Description: GIIM Note: maturase Location: 9183-9390 bp Feature: domain Description: GIIM Note: maturase Location: 9183-9390 bp Feature: gene Location: 10213-12033 bp Feature: domain Description: MdlB Location: 10288-12022 bp Feature: domain Description: MdlB Location: 10288-12022 bp Feature: gene Location: 12271-12633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), STKc_PknB_like (cd14014), HipB (COG1396), RVT-GII, GIIM (pfam08388)

Seq: JEMA01000462.1 Sorangium cellulosum strain So0008-312 scaffold4371, whole genome shotgun sequence (15525 bp)
Overview 1 RT 1: 4967-10819 bp Neighborhood of RT #1 [4967, 10878] DUF4351 RVT-GII urea_trans_UrtE COG4674 Feature: gene Location: 4967-5848 bp Feature: domain Description: DUF4351 Location: 5669-5828 bp Feature: domain Description: DUF435 1 Location: 5 669-5 828 bp Feature: gene Location: 6193-7086 bp Feature: gene Location: 7634-9043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8009-8696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8009-8696 bp Feature: gene Location: 9350-10051 bp Feature: domain Description: urea_trans_UrtE Location: 9356-10049 bp Feature: domain Description: urea_trans_UrtE Location: 935 6-10049 bp Feature: gene Location: 10057-10878 bp Feature: domain Description: COG4674 Location: 10066-10819 bp Feature: domain Description: COG4674 Location: 10066-10819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4674 (ABC-type uncharacterized transport system, ATPase component ), DUF4351 (pfam14261), RVT-GII, urea_trans_UrtE (TIGR03410)