myRT

myRT report for GCA_001591125.1_ASM159112v1

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Seq: BCUE01000003.1 Vibrio mediterranei NBRC 15635 DNA, contig: VME01S_CON0003_0001, whole genome shotgun sequence (363122 bp)
Overview 1 RT 1: 335467-338798 bp Neighborhood of RT #1 [335467, 338983] RVT_N RVT-GII GIIM AbiV_defense Feature: gene Location: 335467-335607 bp Feature: gene Location: 336040-336195 bp Feature: gene Location: 336419-337891 bp Feature: domain Description: RVT_N Location: 336467-336710 bp Feature: domain Description: RVT_N Location: 336467-33671 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336755-337382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336755-337382 bp Feature: domain Description: GIIM Note: maturase Location: 337442-337667 bp Feature: domain Description: GIIM Note: maturase Location: 337442-337667 bp Feature: gene Location: 337903-338118 bp Feature: gene Location: 338318-338983 bp Feature: domain Description: AbiV_defense Location: 338375-338798 bp Feature: domain Description: AbiV_defense Location: 338375-338798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AbiV_defense (TIGR04498)

Seq: BCUE01000010.1 Vibrio mediterranei NBRC 15635 DNA, contig: VME01S_CON0010_0001, whole genome shotgun sequence (178248 bp)
Overview 1 RT 1: 91965-98349 bp Neighborhood of RT #1 [91965, 98349] Resolvase Recombinase Zn_ribbon_recom RVT-UG8 RVT-UG3 Mob_Pre Feature: gene Location: 91965-93494 bp Feature: domain Description: Resolvase Location: 91986-92454 bp Feature: domain Description: Resolvase Location: 91986-92 454 bp Feature: domain Description: Recombinase Location: 92532-92706 bp Feature: domain Description: Recombinase Location: 92 532 -92 706 bp Feature: domain Description: Zn_ribbon_recom Location: 92805-92931 bp Feature: domain Description: Zn_ribbon_recom Location: 92 805-92 931 bp Feature: gene Location: 93514-93681 bp Feature: gene Location: 93755-95779 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 94331-94775 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 94331-94775 bp Feature: gene Location: 95780-97006 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 96062-96539 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 96062 -96539 bp Feature: gene Location: 97162-98097 bp Feature: domain Description: Mob_Pre Location: 97201-97747 bp Feature: domain Description: Mob_Pre Location: 972 01-97747 bp Feature: gene Location: 98098-98349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-UG8, RVT-UG3, Mob_Pre (pfam01076)

Seq: BCUE01000036.1 Vibrio mediterranei NBRC 15635 DNA, contig: VME01S_CON0036_0001, whole genome shotgun sequence (23429 bp)
Overview 1 RT 1: 3472-7476 bp Neighborhood of RT #1 [3472, 7476] SatD SatD RVT_N RVT-GII GIIM Feature: gene Location: 3472-4122 bp Feature: domain Description: SatD Location: 3496-3700 bp Feature: domain Description: SatD Location: 3 496-3 700 bp Feature: domain Description: SatD Location: 3967-4060 bp Feature: domain Description: SatD Location: 3 967-4060 bp Feature: gene Location: 4610-4921 bp Feature: gene Location: 4995-6467 bp Feature: domain Description: RVT_N Location: 5043-5283 bp Feature: domain Description: RVT_N Location: 5043 -5283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5331-5958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 3 1-5958 bp Feature: domain Description: GIIM Note: maturase Location: 6015-6243 bp Feature: domain Description: GIIM Note: maturase Location: 6015-6243 bp Feature: gene Location: 6515-6673 bp Feature: gene Location: 7126-7476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SatD (pfam16264), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)