myRT

myRT report for GCA_001591325.1_ASM159132v1

Download annotations/find similar RTs

Seq: BCUO01000032.1 Shewanella putrefaciens JCM 20190 = NBRC 3908 DNA, contig: SP3_CON0021_0001, whole genome shotgun sequence (81781 bp)
Overview 1 RT 1: 69972-74251 bp Neighborhood of RT #1 [69972, 74430] DUF4124 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 69972-70382 bp Feature: gene Location: 70486-70893 bp Feature: domain Description: DUF4124 Location: 70531-70648 bp Feature: domain Description: DUF41 24 Location: 70531 -70648 bp Feature: gene Location: 71221-72153 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71329-71926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 329-71 926 bp Feature: gene Location: 72155-73786 bp Feature: domain Description: COG3950 Location: 72341-73607 bp Feature: domain Description: COG3950 Location: 72341 -73607 bp Feature: gene Location: 73789-74430 bp Feature: domain Description: TIGR02646 Location: 73882-74251 bp Feature: domain Description: TIGR02646 Location: 73882-74251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4124 (pfam13511), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: BCUO01000046.1 Shewanella putrefaciens JCM 20190 = NBRC 3908 DNA, contig: SP3_CON0033_0001, whole genome shotgun sequence (46000 bp)
Overview 1 RT 1: 18580-24107 bp Neighborhood of RT #1 [18580, 24107] Na_Pro_sym RVT_N RVT-GII GIIM Feature: gene Location: 18580-20076 bp Feature: domain Description: Na_Pro_sym Location: 18598-20053 bp Feature: domain Description: Na_Pro_sym Location: 18598-2 0053 bp Feature: gene Location: 20080-20256 bp Feature: gene Location: 21124-22596 bp Feature: RT Description: RVT_N Location: 21172-21415 bp Feature: RT Description: RVT_N Location: 2 1172 -2 1415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21460-22087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1460-2 2 087 bp Feature: domain Description: GIIM Note: maturase Location: 22144-22372 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 144-2 2 372 bp Feature: gene Location: 22593-22940 bp Feature: gene Location: 23709-24107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Na_Pro_sym (TIGR02121), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BCUO01000065.1 Shewanella putrefaciens JCM 20190 = NBRC 3908 DNA, contig: SP3_CON0051_0001, whole genome shotgun sequence (25717 bp)
Overview 1 RT 1: 3-3573 bp Neighborhood of RT #1 [3, 3581] HNH_5 RVT-GII GIIM UPF0167 Feature: gene Location: 3-929 bp Feature: domain Description: HNH_5 Location: 54-246 bp Feature: domain Description: HNH_5 Location: 54-246 bp Feature: gene Location: 1011-2360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1293-1911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1293 -1911 bp Feature: domain Description: GIIM Note: maturase Location: 1959-2163 bp Feature: domain Description: GIIM Note: maturase Location: 1959-2163 bp Feature: gene Location: 2379-2609 bp Feature: gene Location: 3033-3581 bp Feature: domain Description: UPF0167 Location: 3042-3573 bp Feature: domain Description: UPF0167 Location: 3 042-3 573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), UPF0167 (pfam03691), HNH_5 (pfam14279)