myRT

myRT report for GCA_001592485.1_ASM159248v1

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Seq: BBUR01000011.1 Escherichia coli O119:H6 DNA, contig: 2611_1_85contig0011, strain: 2611-1/85, whole genome shotgun sequence (115696 bp)
Overview 1 RT 1: 100000-105283 bp Neighborhood of RT #1 [100000, 105288] DinI RVT-Retrons Q P Feature: gene Location: 100000-100233 bp Feature: domain Description: DinI Location: 100042-100228 bp Feature: domain Description: DinI Location: 1 00042-1 00228 bp Feature: gene Location: 100321-100482 bp Feature: gene Location: 100515-102455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100839-101463 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 00839-1 01 463 bp Feature: gene Location: 102497-103522 bp Feature: domain Description: Q Location: 102503-103517 bp Feature: domain Description: Q Location: 1 02503-1 0351 7 bp Feature: gene Location: 103522-105288 bp Feature: domain Description: P Location: 103549-105283 bp Feature: domain Description: P Location: 1 03549-1 05283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: BBUR01000020.1 Escherichia coli O119:H6 DNA, contig: 2611_1_85contig0020, strain: 2611-1/85, whole genome shotgun sequence (83839 bp)
Overview 1 RT 1: 22174-26811 bp Neighborhood of RT #1 [22174, 26811] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 22174-22389 bp Feature: gene Location: 22480-22761 bp Feature: domain Description: HTH_XRE Location: 22495-22660 bp Feature: domain Description: HTH_XRE Location: 2 2 495-2 2 660 bp Feature: gene Location: 22754-23854 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22895-23447 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 895-2 3447 bp Feature: gene Location: 23931-25433 bp Feature: domain Description: PRK13889 Location: 23934-24513 bp Feature: domain Description: PRK13889 Location: 2 3934-2 4513 bp Feature: gene Location: 26374-26811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: BBUR01000039.1 Escherichia coli O119:H6 DNA, contig: 2611_1_85contig0039, strain: 2611-1/85, whole genome shotgun sequence (42918 bp)
Overview 1 RT 1: 35317-42760 bp Neighborhood of RT #1 [35317, 42879] prfC SLATT_5 RVT-UG17 Caudo_TAP ABC_SMC2_euk Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 35317-36903 bp Feature: domain Description: prfC Location: 35335-36901 bp Feature: domain Description: prfC Location: 3 53 3 5-3 6901 bp Feature: gene Location: 37434-38138 bp Feature: domain Description: SLATT_5 Location: 37596-38106 bp Feature: domain Description: SLATT_5 Location: 3 7596-3 8106 bp Feature: gene Location: 38116-39486 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 38344-38950 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 83 44-3 8950 bp Feature: gene Location: 39599-40183 bp Feature: domain Description: Caudo_TAP Location: 39815-40172 bp Feature: domain Description: Caudo_TAP Location: 3 9815-40172 bp Feature: gene Location: 40183-42879 bp Feature: domain Description: ABC_SMC2_euk Location: 40249-41230 bp Feature: domain Description: ABC_SMC2_euk Location: 40249-4123 0 bp Feature: domain Description: Collar Location: 42199-42337 bp Feature: domain Description: Collar Location: 42199-423 3 7 bp Feature: domain Description: Phage_fiber Location: 42388-42427 bp Feature: domain Description: Phage_fiber Location: 423 88-42427 bp Feature: domain Description: Phage_fiber Location: 42484-42523 bp Feature: domain Description: Phage_fiber Location: 42484-42523 bp Feature: domain Description: Phage_fiber Location: 42682-42721 bp Feature: domain Description: Phage_fiber Location: 42682-42721 bp Feature: domain Description: Phage_fiber Location: 42727-42760 bp Feature: domain Description: Phage_fiber Location: 42727-42760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), ABC_SMC2_euk (cd03273), Collar (pfam07484), Phage_fiber (pfam03335)