myRT

myRT report for GCA_001592525.1_ASM159252v1

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Seq: BBUT01000020.1 Escherichia coli O119:H6 DNA, contig: 4522_1_89contig0020, strain: 4522-1/89, whole genome shotgun sequence (80697 bp)
Overview 1 RT 1: 65014-70297 bp Neighborhood of RT #1 [65014, 70302] DinI RVT-Retrons Q P Feature: gene Location: 65014-65247 bp Feature: domain Description: DinI Location: 65056-65242 bp Feature: domain Description: DinI Location: 65056-65242 bp Feature: gene Location: 65335-65496 bp Feature: gene Location: 65529-67469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65853-66477 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65853-66477 bp Feature: gene Location: 67511-68536 bp Feature: domain Description: Q Location: 67517-68531 bp Feature: domain Description: Q Location: 6751 7-68531 bp Feature: gene Location: 68536-70302 bp Feature: domain Description: P Location: 68563-70297 bp Feature: domain Description: P Location: 68563-70297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: BBUT01000048.1 Escherichia coli O119:H6 DNA, contig: 4522_1_89contig0048, strain: 4522-1/89, whole genome shotgun sequence (24975 bp)
Overview 1 RT 1: 2-7907 bp Neighborhood of RT #1 [2, 7909] phage_tail_N ABC_SMC2_euk Collar Caudo_TAP RVT-UG17 SLATT_5 prfC Feature: gene Location: 2-3043 bp Feature: domain Description: phage_tail_N Location: 5-287 bp Feature: domain Description: phage_tail_N Location: 5-2 87 bp Feature: domain Description: ABC_SMC2_euk Location: 374-1343 bp Feature: domain Description: ABC_SMC2 _euk Location: 374-1343 bp Feature: domain Description: Collar Location: 2363-2501 bp Feature: domain Description: Collar Location: 2 363-2 501 bp Feature: gene Location: 3043-3627 bp Feature: domain Description: Caudo_TAP Location: 3259-3616 bp Feature: domain Description: Caudo_TAP Location: 32 59-3616 bp Feature: gene Location: 3740-5110 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3968-4574 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3968-4574 bp Feature: gene Location: 5088-5792 bp Feature: domain Description: SLATT_5 Location: 5250-5760 bp Feature: domain Description: SLATT_5 Location: 52 50-5760 bp Feature: gene Location: 6323-7909 bp Feature: domain Description: prfC Location: 6341-7907 bp Feature: domain Description: prfC Location: 6341-7907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), ABC_SMC2_euk (cd03273), Collar (pfam07484), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), prfC (TIGR00503)

Seq: BBUT01000081.1 Escherichia coli O119:H6 DNA, contig: 4522_1_89contig0081, strain: 4522-1/89, whole genome shotgun sequence (6687 bp)
Overview 1 RT 1: 177-3436 bp Neighborhood of RT #1 [177, 3436] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 177-1679 bp Feature: domain Description: PRK13889 Location: 180-759 bp Feature: domain Description: PRK13 889 Location: 180-759 bp Feature: gene Location: 1756-2856 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1897-2449 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1897-2449 bp Feature: gene Location: 2849-3130 bp Feature: domain Description: HTH_XRE Location: 2864-3029 bp Feature: domain Description: HTH_XRE Location: 2864-3 029 bp Feature: gene Location: 3221-3436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)