myRT

myRT report for GCA_001592575.1_ASM159257v1

Download annotations/find similar RTs

Seq: BBUV01000005.1 Escherichia coli O119:H6 DNA, contig: EC402_03contig0005, strain: EC402/03, whole genome shotgun sequence (182351 bp)
Overview 1 RT 1: 177451-182306 bp Neighborhood of RT #1 [177451, 182317] prfC SLATT_5 RVT-UG17 Caudo_TAP Feature: gene Location: 177451-179037 bp Feature: domain Description: prfC Location: 177469-179035 bp Feature: domain Description: prfC Location: 1 77469-1 79035 bp Feature: gene Location: 179568-180272 bp Feature: domain Description: SLATT_5 Location: 179730-180240 bp Feature: domain Description: SLATT_5 Location: 1 79730-1 80240 bp Feature: gene Location: 180250-181620 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 180478-181084 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 80478-1 81 084 bp Feature: gene Location: 181733-182317 bp Feature: domain Description: Caudo_TAP Location: 181949-182306 bp Feature: domain Description: Caudo_TAP Location: 1 81 949-1 82306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413)

Seq: BBUV01000013.1 Escherichia coli O119:H6 DNA, contig: EC402_03contig0013, strain: EC402/03, whole genome shotgun sequence (112741 bp)
Overview 1 RT 1: 97035-102318 bp Neighborhood of RT #1 [97035, 102323] DinI RVT-Retrons Q P Feature: gene Location: 97035-97268 bp Feature: domain Description: DinI Location: 97077-97263 bp Feature: domain Description: DinI Location: 97077-972 63 bp Feature: gene Location: 97356-97517 bp Feature: gene Location: 97550-99490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97874-98498 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97874-98498 bp Feature: gene Location: 99532-100557 bp Feature: domain Description: Q Location: 99538-100552 bp Feature: domain Description: Q Location: 99538-100552 bp Feature: gene Location: 100557-102323 bp Feature: domain Description: P Location: 100584-102318 bp Feature: domain Description: P Location: 100584-102 318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, Q (PHA02536), P (PHA02535)