myRT

myRT report for GCA_001593805.1_ASM159380v1

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Seq: LUCO01000084.1 Bacillus megaterium strain BHG1.1 plasmid BHG-P6 plasmid06, whole genome shotgun sequence (1028 bp)
Overview 1 RT 1: 3-951 bp Neighborhood of RT #1 [3, 1025] RVT-GII GIIM Feature: gene Location: 3-1025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-651 bp Feature: domain Description: GIIM Note: maturase Location: 717-951 bp Feature: domain Description: GIIM Note: maturase Location: 71 7-951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LUCO01000003.1 Bacillus megaterium strain BHG1.1 contig03, whole genome shotgun sequence (427639 bp)
Overview 1 RT 1: 418443-424194 bp Neighborhood of RT #1 [418443, 424238] 2a38 YdeN RVT_N RVT-GII GIIM YrvL Feature: gene Location: 418443-419798 bp Feature: domain Description: 2a38 Location: 418548-419706 bp Feature: domain Description: 2 a38 Location: 418548-419706 bp Feature: gene Location: 420036-420602 bp Feature: domain Description: YdeN Location: 420045-420594 bp Feature: domain Description: YdeN Location: 42 0045-42 0594 bp Feature: gene Location: 421309-422994 bp Feature: domain Description: RVT_N Location: 421393-421639 bp Feature: domain Description: RVT_N Location: 42 1393-42 1639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421693-422353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 1693-42 2 353 bp Feature: domain Description: GIIM Note: maturase Location: 422419-422653 bp Feature: domain Description: GIIM Note: maturase Location: 42 2 419-42 2 653 bp Feature: gene Location: 423202-423519 bp Feature: gene Location: 423753-424238 bp Feature: domain Description: YrvL Location: 423828-424194 bp Feature: domain Description: YrvL Location: 42 382 8-42 4194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2a38 (TIGR00933), YdeN (COG3545), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YrvL (pfam14184)

Seq: LUCO01000011.1 Bacillus megaterium strain BHG1.1 contig11, whole genome shotgun sequence (79626 bp)
Overview 1 RT 1: 76184-79625 bp Neighborhood of RT #1 [76184, 79624] COG3547 COG3547 RimL RVT_N RVT-GII Feature: gene Location: 76184-77470 bp Feature: domain Description: COG3547 Location: 76238-76838 bp Feature: domain Description: COG3 547 Location: 7623 8-7683 8 bp Feature: domain Description: COG3547 Location: 76910-77264 bp Feature: domain Description: COG3 547 Location: 76910-77264 bp Feature: gene Location: 77925-78500 bp Feature: domain Description: RimL Location: 78051-78483 bp Feature: domain Description: RimL Location: 78051-78483 bp Feature: gene Location: 79157-79624 bp Feature: domain Description: RVT_N Location: 79241-79487 bp Feature: domain Description: RVT_N Location: 79241-79487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79541-79625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79541-79625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RimL (COG1670), RVT_N (pfam13655), RVT-GII

Seq: LUCO01000012.1 Bacillus megaterium strain BHG1.1 contig12, whole genome shotgun sequence (77621 bp)
Overview 1 RT 1: 37636-45449 bp Neighborhood of RT #1 [37636, 45449] TIGR02687 Lon_rel_chp RVT-UNC SLATT_5 Feature: gene Location: 37636-40194 bp Feature: domain Description: TIGR02687 Location: 37696-40162 bp Feature: domain Description: TIGR02687 Location: 37696-4 0162 bp Feature: gene Location: 40212-42269 bp Feature: domain Description: Lon_rel_chp Location: 40245-42264 bp Feature: domain Description: Lon_rel_chp Location: 4 024 5-4 2264 bp Feature: gene Location: 42858-44276 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 43323-43713 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4 3323-4 3713 bp Feature: gene Location: 44295-44966 bp Feature: domain Description: SLATT_5 Location: 44334-44946 bp Feature: domain Description: SLATT_5 Location: 4 4 334 -4 4 94 6 bp Feature: gene Location: 45309-45449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02687 (TIGR02687 family protein), Lon_rel_chp (TIGR02653), RVT-AbiA/RVT-Retrons/RVT-UG3/RVT-UG13(RVT-UNC), SLATT_5 (pfam18160)

Seq: LUCO01000013.1 Bacillus megaterium strain BHG1.1 contig13, whole genome shotgun sequence (63160 bp)
Overview 1 RT 1: 27263-32513 bp Neighborhood of RT #1 [27263, 32572] TraG-D_C RVT-GII Intron_maturas2 HNHc TraG_VirD4 TraG_VirD4 Feature: gene Location: 27263-27469 bp Feature: gene Location: 27495-28403 bp Feature: domain Description: TraG-D_C Location: 27504-27816 bp Feature: domain Description: TraG-D_C Location: 275 04-27816 bp Feature: gene Location: 28511-30325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28775-29603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28775 -29603 bp Feature: domain Description: Intron_maturas2 Location: 29681-29975 bp Feature: domain Description: Intron_maturas2 Location: 29681-29975 bp Feature: domain Description: HNHc Note: nucleases Location: 30122-30296 bp Feature: domain Description: HNHc Note: nucleases Location: 30122-30296 bp Feature: gene Location: 30382-30672 bp Feature: gene Location: 30881-32572 bp Feature: domain Description: TraG_VirD4 Location: 31361-32039 bp Feature: domain Description: TraG_VirD4 Location: 31361-32039 bp Feature: domain Description: TraG_VirD4 Location: 32351-32513 bp Feature: domain Description: TraG_VirD4 Location: 3235 1-325 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG_VirD4

Seq: LUCO01000024.1 Bacillus megaterium strain BHG1.1 contig24, whole genome shotgun sequence (34131 bp)
Overview 1 RT 1: 24863-29115 bp Neighborhood of RT #1 [24863, 29115] COG1787 zf-C4_Topoisom RVT-GII GIIM HNHc RVT_N RVT-GII Toprim_2 Feature: gene Location: 24863-25528 bp Feature: domain Description: COG1787 Location: 24938-25334 bp Feature: domain Description: COG1787 Location: 24938-25334 bp Feature: domain Description: zf-C4_Topoisom Location: 25391-25499 bp Feature: domain Description: zf-C4_Topoisom Location: 25391-25499 bp Feature: gene Location: 25555-25740 bp Feature: gene Location: 25743-26918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25749-26145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25749-26 145 bp Feature: domain Description: GIIM Note: maturase Location: 26226-26454 bp Feature: domain Description: GIIM Note: maturase Location: 26 226 -26 454 bp Feature: domain Description: HNHc Note: nucleases Location: 26655-26817 bp Feature: domain Description: HNHc Note: nucleases Location: 26 6 55-26 817 bp Feature: gene Location: 26965-27537 bp Feature: domain Description: RVT_N Location: 27025-27265 bp Feature: domain Description: RVT_N Location: 27025-2726 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27322-27523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27322-27523 bp Feature: gene Location: 28202-28654 bp Feature: domain Description: Toprim_2 Location: 28370-28646 bp Feature: domain Description: Toprim_2 Location: 28370-286 46 bp Feature: gene Location: 28708-29115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1787 (Endonuclease, HJR/Mrr/RecB family ), zf-C4_Topoisom (pfam01396), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), Toprim_2 (pfam13155)

Seq: LUCO01000033.1 Bacillus megaterium strain BHG1.1 contig33, whole genome shotgun sequence (16863 bp)
Overview 1 RT 1: 13907-16860 bp Neighborhood of RT #1 [13907, 16862] DUF3231 DUF3231 RVT_N RVT-GII GIIM Feature: gene Location: 13907-14911 bp Feature: domain Description: DUF3231 Location: 13922-14378 bp Feature: domain Description: DUF3231 Location: 13922-1437 8 bp Feature: domain Description: DUF3231 Location: 14414-14894 bp Feature: domain Description: DUF3231 Location: 14414-14894 bp Feature: gene Location: 15156-15587 bp Feature: gene Location: 15621-16862 bp Feature: domain Description: RVT_N Location: 15726-15969 bp Feature: domain Description: RVT_N Location: 157 26-15969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16026-16686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16026-16686 bp Feature: domain Description: GIIM Note: maturase Location: 16752-16860 bp Feature: domain Description: GIIM Note: maturase Location: 167 52-16860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3231 (pfam11553), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LUCO01000041.1 Bacillus megaterium strain BHG1.1 contig41, whole genome shotgun sequence (9562 bp)
Overview 1 RT 1: 1881-7911 bp Neighborhood of RT #1 [1881, 7964] HipB RVT_N RVT-GII GIIM pfam03781 Beta-lactamase DUF3471 Feature: gene Location: 1881-2177 bp Feature: gene Location: 2435-2875 bp Feature: domain Description: HipB Location: 2441-2756 bp Feature: domain Description: HipB Location: 2441-2756 bp Feature: gene Location: 3498-5183 bp Feature: domain Description: RVT_N Location: 3582-3828 bp Feature: domain Description: RVT_N Location: 358 2-38 28 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3882-4542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38 8 2-4542 bp Feature: domain Description: GIIM Note: maturase Location: 4611-4842 bp Feature: domain Description: GIIM Note: maturase Location: 4611-48 42 bp Feature: gene Location: 5351-6100 bp Feature: domain Description: pfam03781 Location: 5504-6086 bp Feature: domain Description: pfam0378 1 Location: 5504-608 6 bp Feature: gene Location: 6498-7964 bp Feature: domain Description: Beta-lactamase Location: 6546-7509 bp Feature: domain Description: Beta-lactamase Location: 6546-7509 bp Feature: domain Description: DUF3471 Location: 7653-7911 bp Feature: domain Description: DUF3471 Location: 7653-7911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Beta-lactamase (pfam00144), DUF3471 (pfam11954)

Seq: LUCO01000064.1 Bacillus megaterium strain BHG1.1 contig64, whole genome shotgun sequence (1682 bp)
Overview 1 RT 1: 175-1681 bp Neighborhood of RT #1 [175, 1680] RVT_N RVT-GII Feature: gene Location: 175-447 bp Feature: gene Location: 1246-1680 bp Feature: domain Description: RVT_N Location: 1294-1540 bp Feature: domain Description: RVT_N Location: 129 4-1540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1597-1681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159 7-1681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII