myRT

myRT report for GCA_001594005.1_ASM159400v1

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Seq: LTBA01000077.1 Clostridium tepidiprofundi DSM 19306 CLTE_contig000077, whole genome shotgun sequence (5894 bp)
Overview 1 RT 1: 366-4438 bp Neighborhood of RT #1 [366, 4521] RVT-UG14 COG3547 HHH_5 COG3547 Feature: gene Location: 366-1946 bp Ori: KYH30444.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 717-1074 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 71 7-1 074 bp Feature: gene Location: 2245-3117 bp Feature: gene Location: 3241-4521 bp Ori: KYH30446.1 Feature: domain Description: COG3547 Location: 3271-3595 bp Feature: domain Description: COG3547 Location: 3271 -3595 bp Feature: domain Description: HHH_5 Location: 3763-3880 bp Feature: domain Description: HHH_5 Location: 3763-3880 bp Feature: domain Description: COG3547 Location: 4000-4438 bp Feature: domain Description: COG3547 Location: 4000-4438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG14, COG3547 (Transposase ), HHH_5 (pfam14520)

Seq: LTBA01000058.1 Clostridium tepidiprofundi DSM 19306 CLTE_contig000058, whole genome shotgun sequence (9063 bp)
Overview 1 RT 1: 156-4495 bp Neighborhood of RT #1 [156, 4495] Adenyl_transf S2P-M50_PDZ_RseP-like S2P-M50_PDZ_Arch RVT-GII Feature: gene Location: 156-263 bp Ori: KYH30695.1 Feature: domain Description: Adenyl_transf Location: 162-255 bp Feature: domain Description: Adenyl_transf Location: 162 -2 55 bp Feature: gene Location: 977-2026 bp Ori: KYH30696.1 Gene: rasP_2 Feature: domain Description: S2P-M50_PDZ_RseP-like Location: 1022-1583 bp Feature: domain Description: S2 P-M50_PDZ_RseP-like Location: 102 2 -1583 bp Feature: domain Description: S2P-M50_PDZ_Arch Location: 1790-1994 bp Feature: domain Description: S2 P-M50_PDZ_Arch Location: 1790-1994 bp Feature: gene Location: 2604-3032 bp Ori: KYH30697.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2607-3024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 607-302 4 bp Feature: gene Location: 3102-3311 bp Feature: gene Location: 4292-4495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Adenyl_transf (pfam04439), S2P-M50_PDZ_RseP-like (cd06163), S2P-M50_PDZ_Arch (cd06159), RVT-GII

Seq: LTBA01000049.1 Clostridium tepidiprofundi DSM 19306 CLTE_contig000049, whole genome shotgun sequence (14978 bp)
Overview 1 RT 1: 11242-14435 bp Neighborhood of RT #1 [11242, 14437] LbH_MAT_like MATE_Wzx_like RVT-GII Feature: gene Location: 11242-11808 bp Ori: KYH31223.1 Feature: domain Description: LbH_MAT_like Location: 11350-11674 bp Feature: domain Description: LbH_MAT_like Location: 113 50-11674 bp Feature: gene Location: 11829-13208 bp Ori: KYH31224.1 Feature: domain Description: MATE_Wzx_like Location: 11841-12996 bp Feature: domain Description: MATE_Wzx_like Location: 11841-12996 bp Feature: gene Location: 14036-14437 bp Ori: KYH31225.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14294-14435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14294-1443 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LbH_MAT_like (cd04647), MATE_Wzx_like (cd13128), RVT-GII