myRT

myRT report for GCA_001595235.1_CFSAN033854_01.0

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Seq: LVGW01000057.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033854 CFSAN033854_contig0056, whole genome shotgun sequence (14675 bp)
Overview 1 RT 1: 2538-12151 bp Neighborhood of RT #1 [2538, 12153] RVT-GII GIIM PHA02517 InsE PRK13705 PRK13698 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 2538-4046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2796-3528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2796-3528 bp Feature: domain Description: GIIM Note: maturase Location: 3603-3801 bp Feature: domain Description: GIIM Note: maturase Location: 3603-3801 bp Feature: gene Location: 4653-5132 bp Feature: domain Description: PHA02517 Location: 4713-5067 bp Feature: domain Description: PHA0251 7 Location: 471 3-5067 bp Feature: gene Location: 5132-5455 bp Feature: domain Description: InsE Location: 5144-5453 bp Feature: domain Description: InsE Location: 51 44-5453 bp Feature: gene Location: 5852-7018 bp Feature: domain Description: PRK13705 Location: 5855-7016 bp Feature: domain Description: PRK1 3705 Location: 5855-701 6 bp Feature: gene Location: 7018-7989 bp Feature: domain Description: PRK13698 Location: 7021-7981 bp Feature: domain Description: PRK1 3698 Location: 7021 -7981 bp Feature: gene Location: 9236-10744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9494-10226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9494-1 0226 bp Feature: domain Description: GIIM Note: maturase Location: 10301-10499 bp Feature: domain Description: GIIM Note: maturase Location: 1 0301 -1 0499 bp Feature: gene Location: 11351-11830 bp Feature: domain Description: PHA02517 Location: 11411-11765 bp Feature: domain Description: PHA0251 7 Location: 1 1 41 1 -1 1 765 bp Feature: gene Location: 11830-12153 bp Feature: domain Description: InsE Location: 11842-12151 bp Feature: domain Description: InsE Location: 1 1 842-1 21 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), PRK13705 (plasmid-partitioning protein SopA; Provisional), PRK13698 (ParB/RepB/Spo0J family plasmid partition protein)

Seq: LVGW01000048.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033854 CFSAN033854_contig0047, whole genome shotgun sequence (24549 bp)
Overview 1 RT 1: 13596-19374 bp Neighborhood of RT #1 [13596, 19445] PRK10216 PRK10473 RVT-Retrons INT_P4_C Feature: gene Location: 13596-14555 bp Feature: domain Description: PRK10216 Location: 13599-14550 bp Feature: domain Description: PRK102 16 Location: 13599-14550 bp Feature: gene Location: 14524-15711 bp Feature: domain Description: PRK10473 Location: 14527-15703 bp Feature: domain Description: PRK10473 Location: 1452 7-15703 bp Feature: gene Location: 16513-17448 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16624-17209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1662 4-172 09 bp Feature: gene Location: 17448-18410 bp Feature: gene Location: 18735-19445 bp Feature: domain Description: INT_P4_C Location: 18843-19374 bp Feature: domain Description: INT_P4_C Location: 18843-19374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, INT_P4_C (cd00801)