myRT

myRT report for GCA_001595995.1_ASM159599v1

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Seq: LUKO01000206.1 Bradyrhizobium liaoningense strain CCNWSX0360 Scaffold69_1, whole genome shotgun sequence (2440 bp)
Overview 1 RT 1: 79-2313 bp Neighborhood of RT #1 [79, 2313] RVT-GII GIIM Feature: gene Location: 79-1332 bp Ori: KYK44210.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-940 bp Feature: domain Description: GIIM Note: maturase Location: 1021-1255 bp Feature: domain Description: GIIM Note: maturase Location: 1 021 -1 255 bp Feature: gene Location: 1897-2313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LUKO01000188.1 Bradyrhizobium liaoningense strain CCNWSX0360 Scaffold52_1, whole genome shotgun sequence (19803 bp)
Overview 1 RT 1: 6593-13081 bp Neighborhood of RT #1 [6593, 13092] benzyl_alcohol_DH Aes RVT-GII GIIM DDE_3 Tra8 Tra8 Feature: gene Location: 6593-7693 bp Ori: KYK44751.1 Feature: domain Description: benzyl_alcohol_DH Location: 6596-7682 bp Feature: domain Description: benzyl_alcohol_DH Location: 6596-7682 bp Feature: gene Location: 7711-8232 bp Ori: KYK44752.1 Feature: domain Description: Aes Location: 7750-8134 bp Feature: domain Description: Aes Location: 7750-8134 bp Feature: gene Location: 9624-10883 bp Ori: KYK44753.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9840-10494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9840-10494 bp Feature: domain Description: GIIM Note: maturase Location: 10575-10782 bp Feature: domain Description: GIIM Note: maturase Location: 10575-10782 bp Feature: gene Location: 10972-11451 bp Ori: KYK44754.1 Feature: domain Description: DDE_3 Location: 10987-11341 bp Feature: domain Description: DDE_3 Location: 10987-11341 bp Feature: gene Location: 11719-13092 bp Feature: domain Description: Tra8 Location: 12319-12691 bp Feature: domain Description: Tra8 Location: 12 319-12 691 bp Feature: domain Description: Tra8 Location: 12745-13081 bp Feature: domain Description: Tra8 Location: 12 745-13081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT benzyl_alcohol_DH (cd08278), Aes (COG0657), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), Tra8 (COG2826)

Seq: LUKO01000029.1 Bradyrhizobium liaoningense strain CCNWSX0360 Scaffold126_1, whole genome shotgun sequence (4024 bp)
Overview 1 RT 1: 255-3445 bp Neighborhood of RT #1 [255, 3477] RVT-GII RVT-GII nrdF Feature: gene Location: 255-809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-444 bp Feature: gene Location: 885-2134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-1695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-1695 bp Feature: gene Location: 2404-3477 bp Feature: domain Description: nrdF Location: 2479-3445 bp Feature: domain Description: nrdF Location: 2479-3 445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, nrdF (PRK09614)

Seq: LUKO01000216.1 Bradyrhizobium liaoningense strain CCNWSX0360 Scaffold77_1, whole genome shotgun sequence (11339 bp)
Overview 1 RT 1: 5502-11295 bp Neighborhood of RT #1 [5502, 11339] DUF2130 TnpB_IS66 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 5502-6911 bp Ori: KYK43863.1 Feature: domain Description: DUF2130 Location: 6072-6846 bp Feature: domain Description: DUF2130 Location: 6072-684 6 bp Feature: gene Location: 7608-7826 bp Ori: KYK43860.1 Feature: domain Description: TnpB_IS66 Location: 7635-7785 bp Feature: domain Description: TnpB_IS66 Location: 7635-7785 bp Feature: gene Location: 8388-9614 bp Ori: KYK43864.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8550-9207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8550-9207 bp Feature: domain Description: GIIM Note: maturase Location: 9288-9513 bp Feature: domain Description: GIIM Note: maturase Location: 9288-9513 bp Feature: gene Location: 9888-11339 bp Ori: KYK43861.1 Feature: domain Description: LZ_Tnp_IS66 Location: 10047-10278 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1004 7-10278 bp Feature: domain Description: zf-IS66 Location: 10293-10428 bp Feature: domain Description: zf-IS66 Location: 10293-104 28 bp Feature: domain Description: DDE_Tnp_IS66 Location: 10461-11295 bp Feature: domain Description: DDE_Tnp_IS66 Location: 104 61-11295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2130 (pfam09903), TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: LUKO01000025.1 Bradyrhizobium liaoningense strain CCNWSX0360 Scaffold122_1, whole genome shotgun sequence (4302 bp)
Overview 1 RT 1: 1493-3855 bp Neighborhood of RT #1 [1493, 3929] PHA02517 RVT-GII GIIM Feature: gene Location: 1493-2140 bp Feature: domain Description: PHA02517 Location: 1580-2138 bp Feature: domain Description: PHA025 17 Location: 15 80-2138 bp Feature: gene Location: 2685-3929 bp Ori: KYK50157.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889-3549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889-35 49 bp Feature: domain Description: GIIM Note: maturase Location: 3630-3855 bp Feature: domain Description: GIIM Note: maturase Location: 3630-385 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LUKO01000235.1 Bradyrhizobium liaoningense strain CCNWSX0360 Scaffold93_1, whole genome shotgun sequence (7915 bp)
Overview 1 RT 1: 2594-7220 bp Neighborhood of RT #1 [2594, 7327] COG3547 PHA02517 RVT-GII GIIM HTH_Tnp_1 Feature: gene Location: 2594-3619 bp Ori: KYK43208.1 Feature: domain Description: COG3547 Location: 2612-3578 bp Feature: domain Description: COG3547 Location: 26 12-3578 bp Feature: gene Location: 3878-4285 bp Feature: domain Description: PHA02517 Location: 3881-4226 bp Feature: domain Description: PHA02517 Location: 3881-4226 bp Feature: gene Location: 4447-5961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4705-5440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4705-5440 bp Feature: domain Description: GIIM Note: maturase Location: 5512-5740 bp Feature: domain Description: GIIM Note: maturase Location: 5512-5740 bp Feature: gene Location: 6070-6342 bp Feature: gene Location: 7022-7327 bp Ori: KYK43212.1 Feature: domain Description: HTH_Tnp_1 Location: 7094-7220 bp Feature: domain Description: HTH_Tnp_1 Location: 7094-7220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527)