myRT

myRT report for GCA_001596485.1_ASM159648v1

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Seq: LVEA01000001.1 Fusobacterium necrophorum subsp. funduliforme strain LS_1264 contig_1, whole genome shotgun sequence (700506 bp)
Overview 1 RT 1: 28831-31439 bp Neighborhood of RT #1 [28831, 31439] RVT-Retrons Bro-N ORF6C Feature: gene Location: 28831-29016 bp Feature: gene Location: 29004-29282 bp Feature: gene Location: 29333-29800 bp Ori: KYL05190.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29339-29555 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29339-29555 bp Feature: gene Location: 29964-30692 bp Ori: KYL05191.1 Feature: domain Description: Bro-N Location: 30033-30279 bp Feature: domain Description: Bro-N Location: 30033-30279 bp Feature: domain Description: ORF6C Location: 30372-30675 bp Feature: domain Description: ORF6C Location: 30372-30675 bp Feature: gene Location: 30708-31439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Bro-N (smart01040), ORF6C (pfam10552)

Seq: LVEA01000053.1 Fusobacterium necrophorum subsp. funduliforme strain LS_1264 contig_4, whole genome shotgun sequence (108204 bp)
Overview 1 RT 1: 89359-95463 bp Neighborhood of RT #1 [89359, 95885] HsdM RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like RVT-AbiK PRK04247 COG3586 KilA-N Feature: gene Location: 89359-90786 bp Ori: KYL03058.1 Feature: domain Description: HsdM Location: 89365-90766 bp Feature: domain Description: HsdM Location: 89365-90766 bp Feature: gene Location: 90798-92285 bp Ori: KYL03059.1 Feature: domain Description: RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like Location: 91146-91386 bp Feature: domain Description: RMtype1_S_Hpy180ORF7835P_TRD2 -CR2 _like Location: 91146-91386 bp Feature: domain Description: RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like Location: 91656-92175 bp Feature: domain Description: RMtype1_S_Hpy180ORF7835P_TRD2 -CR2 _like Location: 91656-92 175 bp Feature: gene Location: 92289-94097 bp Ori: KYL03060.1 Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 92766-93156 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 92 766-93156 bp Feature: gene Location: 94111-95019 bp Ori: KYL03061.1 Feature: domain Description: PRK04247 Location: 94180-94387 bp Feature: domain Description: PRK042 47 Location: 94180-94387 bp Feature: domain Description: COG3586 Location: 94717-95014 bp Feature: domain Description: COG3586 Location: 94717-95014 bp Feature: gene Location: 95034-95885 bp Ori: KYL03062.1 Feature: domain Description: KilA-N Location: 95103-95463 bp Feature: domain Description: KilA-N Location: 95103-95463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like (cd17283), RVT-AbiK, PRK04247 (endonuclease NucS), COG3586 (Predicted transport protein ), KilA-N (pfam04383)