myRT

myRT report for GCA_001597655.1_ASM159765v1

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Seq: LOMK01000002.1 Vibrio cidicii strain 2756-81 Vn_2756-81_contig2, whole genome shotgun sequence (1318920 bp)
Overview 1 RT 1: 1298440-1303958 bp Neighborhood of RT #1 [1298440, 1303966] KOG1270 LysR RVT-GII GIIM PRK11689 Feature: gene Location: 1298440-1299048 bp Feature: domain Description: KOG1270 Location: 1298515-1298857 bp Feature: domain Description: KOG1 270 Location: 1 29851 5-1 298857 bp Feature: gene Location: 1299203-1300081 bp Feature: domain Description: LysR Location: 1299206-1300070 bp Feature: domain Description: LysR Location: 1 299206-1 300070 bp Feature: gene Location: 1301207-1302499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301405-1302017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 301 405-1 30201 7 bp Feature: domain Description: GIIM Note: maturase Location: 1302071-1302275 bp Feature: domain Description: GIIM Note: maturase Location: 1 302071 -1 302275 bp Feature: gene Location: 1303079-1303966 bp Feature: domain Description: PRK11689 Location: 1303085-1303958 bp Feature: domain Description: PRK1 1 689 Location: 1 303085-1 303958 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: LOMK01000001.1 Vibrio cidicii strain 2756-81 Vn_2756-81_contig1, whole genome shotgun sequence (3441415 bp)
Overview 1 RT 1: 260039-266622 bp 2 RT 2: 305138-308404 bp 3 RT 3: 568046-574981 bp 4 RT 4: 914521-918612 bp 5 RT 5: 2322352-2326795 bp 6 RT 6: 2572373-2576192 bp 7 RT 7: 2617094-2623893 bp 8 RT 8: 3319358-3322639 bp Neighborhood of RT #1 [260039, 266717] SDR_c RVT-Retrons COG3415 DDE_3 Neighborhood of RT #2 [305138, 308404] InsE PHA02517 RVT_N RVT-GII Neighborhood of RT #3 [568046, 574983] RVT-GII GIIM RVT-GII GIIM SLC6sbd_Tyt1-Like cls Neighborhood of RT #4 [914521, 918836] YbaN LysR RVT-GII GIIM Neighborhood of RT #5 [2322352, 2326842] RVT-GII GIIM protease_degS PRK11677 Neighborhood of RT #6 [2572373, 2576299] DUF3622 RVT-GII GIIM COG3608 Neighborhood of RT #7 [2617094, 2623916] PRK11007 trehalose_treC RVT-GII GIIM OMP_b-brl Neighborhood of RT #8 [3319358, 3322863] rhamnulo_kin RVT-GII GIIM Feature: gene Location: 260039-260803 bp Feature: domain Description: SDR_c Location: 260045-260672 bp Feature: domain Description: SDR_c Location: 2 60045-2 60672 bp Feature: gene Location: 260987-261412 bp Feature: gene Location: 262481-264334 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 262616-263333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 62 616-2 63333 bp Feature: gene Location: 265133-265543 bp Feature: gene Location: 265683-266717 bp Feature: domain Description: COG3415 Location: 265743-266160 bp Feature: domain Description: COG3415 Location: 2 65743-2 66160 bp Feature: domain Description: DDE_3 Location: 266211-266622 bp Feature: domain Description: DDE_3 Location: 2 662 11-2 6662 2 bp Feature: gene Location: 305138-305449 bp Feature: domain Description: InsE Location: 305141-305435 bp Feature: domain Description: InsE Location: 305141-305435 bp Feature: gene Location: 305446-306297 bp Feature: domain Description: PHA02517 Location: 305500-306280 bp Feature: domain Description: PHA02 517 Location: 305500-3062 80 bp Feature: gene Location: 306329-307255 bp Feature: RT Description: RVT_N Location: 306377-306617 bp Feature: RT Description: RVT_N Location: 306377-306617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306665-307256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306665-3072 56 bp Feature: gene Location: 307403-307630 bp Feature: gene Location: 308210-308404 bp Feature: gene Location: 568046-569338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568244-568856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5682 44-568856 bp Feature: domain Description: GIIM Note: maturase Location: 568910-569114 bp Feature: domain Description: GIIM Note: maturase Location: 568910-569114 bp Feature: gene Location: 569936-571228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570134-570746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570134-570746 bp Feature: domain Description: GIIM Note: maturase Location: 570800-571004 bp Feature: domain Description: GIIM Note: maturase Location: 570800-571004 bp Feature: gene Location: 571838-573181 bp Feature: domain Description: SLC6sbd_Tyt1-Like Location: 571862-573173 bp Feature: domain Description: SLC6sbd_Tyt1-Like Location: 571862 -573173 bp Feature: gene Location: 573529-574983 bp Feature: domain Description: cls Location: 573544-574981 bp Feature: domain Description: cls Location: 573544-574981 bp Feature: gene Location: 914521-914928 bp Feature: domain Description: YbaN Location: 914551-914890 bp Feature: domain Description: YbaN Location: 914551-914890 bp Feature: gene Location: 916622-917509 bp Feature: domain Description: LysR Location: 916625-917483 bp Feature: domain Description: LysR Location: 91662 5-917483 bp Feature: gene Location: 917544-918836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917742-918354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917742 -918354 bp Feature: domain Description: GIIM Note: maturase Location: 918408-918612 bp Feature: domain Description: GIIM Note: maturase Location: 918408-918612 bp Feature: gene Location: 2322352-2323644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2322550-2323162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 2 550-2 32 3162 bp Feature: domain Description: GIIM Note: maturase Location: 2323216-2323420 bp Feature: domain Description: GIIM Note: maturase Location: 2 32 32 16-2 32 342 0 bp Feature: gene Location: 2323688-2324755 bp Feature: domain Description: protease_degS Location: 2323697-2324744 bp Feature: domain Description: protease_degS Location: 2 32 3697-2 32 4744 bp Feature: gene Location: 2326393-2326842 bp Feature: domain Description: PRK11677 Location: 2326396-2326795 bp Feature: domain Description: PRK11677 Location: 2 32 6396-2 32 6795 bp Feature: gene Location: 2572373-2572690 bp Feature: domain Description: DUF3622 Location: 2572376-2572583 bp Feature: domain Description: DUF362 2 Location: 2 572 376-2 572 583 bp Feature: gene Location: 2573309-2574601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2573507-2574119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 573507-2 574119 bp Feature: domain Description: GIIM Note: maturase Location: 2574173-2574377 bp Feature: domain Description: GIIM Note: maturase Location: 2 574173-2 574377 bp Feature: gene Location: 2574660-2575160 bp Feature: gene Location: 2575241-2576299 bp Feature: domain Description: COG3608 Location: 2575253-2576192 bp Feature: domain Description: COG3608 Location: 2 5752 53-2 576192 bp Feature: gene Location: 2617094-2618518 bp Feature: domain Description: PRK11007 Location: 2617097-2618504 bp Feature: domain Description: PRK11007 Location: 2 617097-2 618504 bp Feature: gene Location: 2618589-2620274 bp Feature: domain Description: trehalose_treC Location: 2618619-2620260 bp Feature: domain Description: trehalose_treC Location: 2 618619-2 62 02 60 bp Feature: gene Location: 2620887-2622179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2621085-2621697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 1085-2 62 1697 bp Feature: domain Description: GIIM Note: maturase Location: 2621751-2621955 bp Feature: domain Description: GIIM Note: maturase Location: 2 62 1751-2 62 1955 bp Feature: gene Location: 2622214-2623089 bp Feature: gene Location: 2623389-2623916 bp Feature: domain Description: OMP_b-brl Location: 2623422-2623893 bp Feature: domain Description: OMP_b-brl Location: 2 62 342 2 -2 62 3893 bp Feature: gene Location: 3319358-3320797 bp Feature: domain Description: rhamnulo_kin Location: 3319373-3320723 bp Feature: domain Description: rhamnulo_kin Location: 3319373-332 072 3 bp Feature: gene Location: 3321571-3322863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3321769-3322381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 1769-332 2 381 bp Feature: domain Description: GIIM Note: maturase Location: 3322435-3322639 bp Feature: domain Description: GIIM Note: maturase Location: 332 2 435-332 2 639 bp Sorry, your browser does not support inline SVG.
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