myRT

myRT report for GCA_001597815.1_ASM159781v1

Download annotations/find similar RTs

Seq: LSAQ01000090.1 Escherichia coli strain CMCEC_NDM_1 contig_18, whole genome shotgun sequence (77416 bp)
Overview 1 RT 1: 1-4491 bp Neighborhood of RT #1 [1, 4598] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 1-179 bp Feature: gene Location: 182-1323 bp Feature: domain Description: Arm-DNA-bind_3 Location: 191-443 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 91 -443 bp Feature: gene Location: 1778-2710 bp Ori: KYN60669.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1880-2474 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 880-2474 bp Feature: gene Location: 2712-3680 bp Feature: gene Location: 4326-4598 bp Ori: KYN60671.1 Feature: domain Description: PRK09678 Location: 4335-4491 bp Feature: domain Description: PRK09678 Location: 4335-4491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: LSAQ01000003.1 Escherichia coli strain CMCEC_NDM_1 contig_100, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2179] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 278-703 bp Feature: gene Location: 672-2179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSAQ01000177.1 Escherichia coli strain CMCEC_NDM_1 contig_8, whole genome shotgun sequence (181050 bp)
Overview 1 RT 1: 152046-158439 bp Neighborhood of RT #1 [152046, 158462] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 152046-152963 bp Ori: KYN51712.1 Feature: domain Description: PFLE_PFLC Location: 152082-152937 bp Feature: domain Description: PFLE_PFLC Location: 152082-15293 7 bp Feature: gene Location: 153100-154004 bp Feature: gene Location: 154490-155029 bp Ori: KYN51713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154820-154898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154820-154898 bp Feature: gene Location: 155057-155578 bp Ori: KYN51714.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155063-155345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155063 -1553 45 bp Feature: domain Description: GIIM Note: maturase Location: 155393-155573 bp Feature: domain Description: GIIM Note: maturase Location: 1553 93 -155573 bp Feature: gene Location: 156161-157390 bp Ori: KYN51736.1 Feature: domain Description: YesM Location: 156641-157382 bp Feature: domain Description: YesM Location: 156641-1573 82 bp Feature: gene Location: 157407-158462 bp Ori: KYN51715.1 Feature: domain Description: YesN Location: 157410-157800 bp Feature: domain Description: YesN Location: 157410-157800 bp Feature: domain Description: YesN Location: 158142-158439 bp Feature: domain Description: YesN Location: 158142-15843 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)