myRT

myRT report for GCA_001597825.1_ASM159782v1

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Seq: LSAP01000151.1 Escherichia coli strain CMCEC_NDM_2 contig_9, whole genome shotgun sequence (181405 bp)
Overview 1 RT 1: 152050-158443 bp Neighborhood of RT #1 [152050, 158466] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 152050-152967 bp Ori: KYN51112.1 Feature: domain Description: PFLE_PFLC Location: 152086-152941 bp Feature: domain Description: PFLE_PFLC Location: 1 52086-1 52941 bp Feature: gene Location: 153104-154008 bp Feature: gene Location: 154494-155033 bp Ori: KYN51113.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154824-154902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 54824-1 54902 bp Feature: gene Location: 155061-155582 bp Ori: KYN51114.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155067-155349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 55067-1 55349 bp Feature: domain Description: GIIM Note: maturase Location: 155397-155577 bp Feature: domain Description: GIIM Note: maturase Location: 1 55397-1 55577 bp Feature: gene Location: 156165-157394 bp Ori: KYN51138.1 Feature: domain Description: YesM Location: 156645-157386 bp Feature: domain Description: YesM Location: 1 56645-1 57386 bp Feature: gene Location: 157411-158466 bp Ori: KYN51115.1 Feature: domain Description: YesN Location: 157414-157804 bp Feature: domain Description: YesN Location: 1 5741 4-1 57804 bp Feature: domain Description: YesN Location: 158146-158443 bp Feature: domain Description: YesN Location: 1 581 46-1 58443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)

Seq: LSAP01000150.1 Escherichia coli strain CMCEC_NDM_2 contig_89, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 1-1203 bp Neighborhood of RT #1 [1, 2179] RVT-GII Feature: gene Location: 1-363 bp Feature: gene Location: 278-703 bp Feature: gene Location: 672-2179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-12 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LSAP01000072.1 Escherichia coli strain CMCEC_NDM_2 contig_18, whole genome shotgun sequence (85786 bp)
Overview 1 RT 1: 6332-8537 bp Neighborhood of RT #1 [6332, 8537] PinE RVT-GII Feature: gene Location: 6332-6547 bp Feature: domain Description: PinE Location: 6335-6539 bp Feature: domain Description: PinE Location: 63 3 5-653 9 bp Feature: gene Location: 6527-6764 bp Feature: gene Location: 6842-8325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7244-7934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7244-793 4 bp Feature: gene Location: 8325-8537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII

Seq: LSAP01000075.1 Escherichia coli strain CMCEC_NDM_2 contig_20, whole genome shotgun sequence (77292 bp)
Overview 1 RT 1: 58-4368 bp Neighborhood of RT #1 [58, 4475] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 58-1199 bp Feature: domain Description: Arm-DNA-bind_3 Location: 67-319 bp Feature: domain Description: Arm-DNA-bind_3 Location: 67-319 bp Feature: gene Location: 1654-2586 bp Ori: KYN59008.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1756-2350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1756-2350 bp Feature: gene Location: 2588-3557 bp Feature: gene Location: 4203-4475 bp Ori: KYN59009.1 Feature: domain Description: PRK09678 Location: 4212-4368 bp Feature: domain Description: PRK09678 Location: 4 212-4 368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: LSAP01000143.1 Escherichia coli strain CMCEC_NDM_2 contig_82, whole genome shotgun sequence (2774 bp)
Overview 1 RT 1: 93-1725 bp Neighborhood of RT #1 [93, 1760] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Ori: KYN51300.1 Feature: domain Description: RVT_N Location: 141-378 bp Feature: domain Description: RVT_N Location: 141-378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1122-135 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 15 66-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)