myRT

myRT report for GCA_001597955.1_ASM159795v1

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Seq: LOBP01000022.1 Vibrio cidicii strain 1048-83 Contig_118, whole genome shotgun sequence (1934 bp)
Overview 1 RT 1: 495-1755 bp Neighborhood of RT #1 [495, 1856] RVT-GII GIIM Feature: gene Location: 495-1856 bp Ori: KYN90792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1 467 bp Feature: domain Description: GIIM Note: maturase Location: 1551-1755 bp Feature: domain Description: GIIM Note: maturase Location: 1 551 -1 755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LOBP01000195.1 Vibrio cidicii strain 1048-83 Contig_8, whole genome shotgun sequence (130892 bp)
Overview 1 RT 1: 114464-120202 bp Neighborhood of RT #1 [114464, 120243] COG2859 RVT-Retrons YafY YafY Feature: gene Location: 114464-115180 bp Ori: KYN80877.1 Feature: domain Description: COG2859 Location: 114482-115178 bp Feature: domain Description: COG2 859 Location: 114482 -115178 bp Feature: gene Location: 115881-116858 bp Feature: gene Location: 116848-117777 bp Ori: KYN80879.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 116947-117532 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 116947-117532 bp Feature: gene Location: 119117-119578 bp Feature: gene Location: 119626-120243 bp Ori: KYN80881.1 Feature: domain Description: YafY Location: 119656-119845 bp Feature: domain Description: YafY Location: 119656-119845 bp Feature: domain Description: YafY Location: 120013-120202 bp Feature: domain Description: YafY Location: 12 0013-12 02 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2859 (Uncharacterized protein ), RVT-Retrons, YafY (COG2378)

Seq: LOBP01000158.1 Vibrio cidicii strain 1048-83 Contig_46, whole genome shotgun sequence (30306 bp)
Overview 1 RT 1: 14836-19803 bp Neighborhood of RT #1 [14836, 19901] RVT_N RVT-GII LysR COG5421 Feature: gene Location: 14836-15048 bp Feature: gene Location: 15489-15725 bp Ori: KYN84659.1 Feature: domain Description: RVT_N Location: 15537-15714 bp Feature: domain Description: RVT_N Location: 1553 7-15714 bp Feature: gene Location: 15776-15973 bp Ori: KYN84660.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15824-15902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15824-15902 bp Feature: gene Location: 16211-17035 bp Ori: KYN84661.1 Feature: domain Description: LysR Location: 16220-17030 bp Feature: domain Description: LysR Location: 16220-1703 0 bp Feature: gene Location: 18291-19901 bp Ori: KYN84662.1 Feature: domain Description: COG5421 Location: 18339-19803 bp Feature: domain Description: COG5421 Location: 183 3 9-19803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, LysR (COG0583), COG5421 (Transposase )