myRT

myRT report for GCA_001598055.1_ASM159805v1

Download annotations/find similar RTs

Seq: CP014844.1 Cupriavidus nantongensis strain X1 chromosome 1, complete sequence (4619440 bp)
Overview 1 RT 1: 599168-605392 bp 2 RT 2: 976426-983710 bp 3 RT 3: 1310995-1316100 bp 4 RT 4: 1695316-1701764 bp 5 RT 5: 1725168-1730308 bp 6 RT 6: 2516202-2523348 bp 7 RT 7: 3112790-3119458 bp 8 RT 8: 3621381-3628222 bp 9 RT 9: 3633270-3644936 bp Neighborhood of RT #1 [599168, 605409] PRK10666 RVT-GII GIIM gshA_ferroox PRK05246 Neighborhood of RT #2 [976426, 983772] PqiA PerM RVT-GII GIIM COG3448 ClcA CBS_pair_Sp... Neighborhood of RT #3 [1310995, 1316276] COG3748 RVT-GII GIIM Gdt1 Delta12-FADS-like Neighborhood of RT #4 [1695316, 1701764] DUF4055 Phage_Mu_F RVT-GII GIIM Neighborhood of RT #5 [1725168, 1730308] OYE_YqiM_FMN TIGR02118 RVT-GII GIIM DUF3085 Neighborhood of RT #6 [2516202, 2523365] STE14 SapB RVT-GII GIIM KfrA_N xerC Neighborhood of RT #7 [3112790, 3120477] Mrr_cat RVT_N RVT-GII YkfC DUF932 Spo0J Neighborhood of RT #8 [3621381, 3628407] PBP1_ABC_transporter_LIVBP_like RVT-GII GIIM Methyltransf_31 Mplasa_alph_rch GT4_TuaH-like Glycos_transf_2 Neighborhood of RT #9 [3633270, 3645070] Acetyltransf_7 DUF1778 RVT-GII GIIM COG4644 DDE_Tnp_Tn3 DUF3701 xerD RVT-GII GIIM TIGR02118 OYE_YqiM_FMN Feature: gene Location: 599168-600724 bp Feature: domain Description: PRK10666 Location: 599372-600719 bp Feature: domain Description: PRK1 0666 Location: 599372-60071 9 bp Feature: gene Location: 600804-601094 bp Feature: gene Location: 601204-602571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601537-602149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601 537-6021 49 bp Feature: domain Description: GIIM Note: maturase Location: 602209-602425 bp Feature: domain Description: GIIM Note: maturase Location: 602209-602425 bp Feature: gene Location: 603140-604435 bp Feature: domain Description: gshA_ferroox Location: 603191-604415 bp Feature: domain Description: gshA_ferroox Location: 6031 91 -60441 5 bp Feature: gene Location: 604444-605409 bp Feature: domain Description: PRK05246 Location: 604447-605392 bp Feature: domain Description: PRK05246 Location: 604447-605392 bp Feature: gene Location: 976426-977124 bp Feature: domain Description: PqiA Location: 976621-977077 bp Feature: domain Description: PqiA Location: 976621 -977077 bp Feature: gene Location: 977124-978290 bp Feature: domain Description: PerM Location: 977145-978168 bp Feature: domain Description: PerM Location: 9771 45-9781 68 bp Feature: gene Location: 978858-980255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979191-979809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9791 91 -979809 bp Feature: domain Description: GIIM Note: maturase Location: 979860-980085 bp Feature: domain Description: GIIM Note: maturase Location: 979860-980085 bp Feature: gene Location: 980738-981874 bp Feature: domain Description: COG3448 Location: 980774-981857 bp Feature: domain Description: COG3448 Location: 980774-981 857 bp Feature: gene Location: 982015-983772 bp Feature: domain Description: ClcA Location: 982069-983326 bp Feature: domain Description: ClcA Location: 982069-983326 bp Feature: domain Description: CBS_pair_Sp... Location: 983368-983710 bp Feature: domain Description: CBS_pair_Sp... Location: 983368-98371 0 bp Feature: gene Location: 1310995-1312200 bp Feature: domain Description: COG3748 Location: 1310998-1312192 bp Feature: domain Description: COG3748 Location: 1 31 0998-1 31 21 92 bp Feature: gene Location: 1312356-1312646 bp Feature: gene Location: 1312756-1314123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1313089-1313701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 3089-1 31 3701 bp Feature: domain Description: GIIM Note: maturase Location: 1313761-1313977 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 3761 -1 31 3977 bp Feature: gene Location: 1314223-1314798 bp Feature: domain Description: Gdt1 Location: 1314226-1314787 bp Feature: domain Description: Gdt1 Location: 1 31 4226-1 31 4787 bp Feature: gene Location: 1315113-1316276 bp Feature: domain Description: Delta12-FADS-like Location: 1315293-1316100 bp Feature: domain Description: Delta1 2-FADS-like Location: 1 31 5293-1 31 61 00 bp Feature: gene Location: 1695316-1696686 bp Feature: domain Description: DUF4055 Location: 1696051-1696456 bp Feature: domain Description: DUF4055 Location: 1 696051 -1 696456 bp Feature: gene Location: 1696689-1697747 bp Feature: domain Description: Phage_Mu_F Location: 1697130-1697487 bp Feature: domain Description: Phage_Mu_F Location: 1 6971 30-1 697487 bp Feature: gene Location: 1698367-1699698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1698658-1699321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 698658-1 699321 bp Feature: domain Description: GIIM Note: maturase Location: 1699390-1699600 bp Feature: domain Description: GIIM Note: maturase Location: 1 699390-1 699600 bp Feature: gene Location: 1699989-1700774 bp Feature: gene Location: 1700778-1701764 bp Feature: gene Location: 1725168-1726343 bp Feature: domain Description: OYE_YqiM_FMN Location: 1725186-1726209 bp Feature: domain Description: OYE_YqiM_FMN Location: 1 7251 86-1 726209 bp Feature: gene Location: 1726412-1726912 bp Feature: domain Description: TIGR02118 Location: 1726595-1726871 bp Feature: domain Description: TIGR021 1 8 Location: 1 726595-1 726871 bp Feature: gene Location: 1727119-1728450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1727410-1728073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 72741 0-1 728073 bp Feature: domain Description: GIIM Note: maturase Location: 1728142-1728352 bp Feature: domain Description: GIIM Note: maturase Location: 1 7281 42-1 728352 bp Feature: gene Location: 1729007-1729360 bp Feature: domain Description: DUF3085 Location: 1729073-1729340 bp Feature: domain Description: DUF3085 Location: 1 729073-1 729340 bp Feature: gene Location: 1729484-1730308 bp Feature: gene Location: 2516202-2517056 bp Feature: domain Description: STE14 Location: 2516487-2516898 bp Feature: domain Description: STE1 4 Location: 251 6487-251 6898 bp Feature: gene Location: 2517102-2517560 bp Feature: domain Description: SapB Location: 2517162-2517546 bp Feature: domain Description: SapB Location: 251 71 62-251 7546 bp Feature: gene Location: 2518218-2519549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2518509-2519172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 8509-251 91 72 bp Feature: domain Description: GIIM Note: maturase Location: 2519241-2519451 bp Feature: domain Description: GIIM Note: maturase Location: 251 9241 -251 9451 bp Feature: gene Location: 2520925-2521863 bp Feature: domain Description: KfrA_N Location: 2520946-2521324 bp Feature: domain Description: KfrA_N Location: 2520946-2521 324 bp Feature: gene Location: 2521860-2523365 bp Feature: domain Description: xerC Location: 2522379-2523348 bp Feature: domain Description: xerC Location: 2522379-2523348 bp Feature: gene Location: 3112790-3114013 bp Feature: gene Location: 3114173-3114709 bp Feature: domain Description: Mrr_cat Location: 3114281-3114482 bp Feature: domain Description: Mrr_cat Location: 31 1 4281 -31 1 4482 bp Feature: gene Location: 3114966-3116465 bp Feature: RT Description: RVT_N Location: 3115029-3115263 bp Feature: RT Description: RVT_N Location: 31 1 5029-31 1 5263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3115317-3115959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 531 7-31 1 5959 bp Feature: domain Description: YkfC Location: 3116058-3116241 bp Feature: domain Description: YkfC Location: 31 1 6058-31 1 6241 bp Feature: gene Location: 3117533-3118363 bp Feature: domain Description: DUF932 Location: 3117644-3118328 bp Feature: domain Description: DUF932 Location: 31 1 7644-31 1 8328 bp Feature: gene Location: 3118429-3120477 bp Feature: domain Description: Spo0J Location: 3118492-3119458 bp Feature: domain Description: Spo0J Location: 31 1 8492-31 1 9458 bp Feature: gene Location: 3621381-3622541 bp Feature: domain Description: PBP1_ABC_transporter_LIVBP_like Location: 3621429-3622455 bp Feature: domain Description: PBP1 _ABC_transporter_LIVBP_like Location: 3621 429-3622455 bp Feature: gene Location: 3622887-3623075 bp Feature: gene Location: 3623218-3624549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3623509-3624172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3623509-36241 72 bp Feature: domain Description: GIIM Note: maturase Location: 3624241-3624451 bp Feature: domain Description: GIIM Note: maturase Location: 3624241 -3624451 bp Feature: gene Location: 3625427-3625624 bp Feature: gene Location: 3625621-3628407 bp Feature: domain Description: Methyltransf_31 Location: 3625639-3625906 bp Feature: domain Description: Methyltransf_31 Location: 3625639-3625906 bp Feature: domain Description: Mplasa_alph_rch Location: 3626122-3626557 bp Feature: domain Description: Mplasa_alph_rch Location: 36261 22-3626557 bp Feature: domain Description: GT4_TuaH-like Location: 3627112-3627811 bp Feature: domain Description: GT4_TuaH-like Location: 36271 1 2-362781 1 bp Feature: domain Description: Glycos_transf_2 Location: 3627853-3628222 bp Feature: domain Description: Glycos_transf_2 Location: 3627853-3628222 bp Feature: gene Location: 3633270-3633716 bp Feature: domain Description: Acetyltransf_7 Location: 3633327-3633627 bp Feature: domain Description: Acetyltransf_7 Location: 3633327-3633627 bp Feature: gene Location: 3633779-3634081 bp Feature: domain Description: DUF1778 Location: 3633824-3634061 bp Feature: domain Description: DUF1 778 Location: 3633824-3634061 bp Feature: gene Location: 3634494-3635825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634785-3635448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634785-3635448 bp Feature: domain Description: GIIM Note: maturase Location: 3635517-3635727 bp Feature: domain Description: GIIM Note: maturase Location: 363551 7-3635727 bp Feature: gene Location: 3636421-3639387 bp Feature: domain Description: COG4644 Location: 3636439-3636730 bp Feature: domain Description: COG4644 Location: 3636439-3636730 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3638161-3639319 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 36381 61 -363931 9 bp Feature: gene Location: 3639543-3641246 bp Feature: domain Description: DUF3701 Location: 3639846-3640098 bp Feature: domain Description: DUF3701 Location: 3639846-3640098 bp Feature: domain Description: xerD Location: 3640254-3641190 bp Feature: domain Description: xerD Location: 3640254-3641 1 90 bp Feature: gene Location: 3641788-3643119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3642079-3642742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3642079-3642742 bp Feature: domain Description: GIIM Note: maturase Location: 3642811-3643021 bp Feature: domain Description: GIIM Note: maturase Location: 364281 1 -3643021 bp Feature: gene Location: 3643326-3643826 bp Feature: domain Description: TIGR02118 Location: 3643509-3643785 bp Feature: domain Description: TIGR021 1 8 Location: 3643509-3643785 bp Feature: gene Location: 3643895-3645070 bp Feature: domain Description: OYE_YqiM_FMN Location: 3643913-3644936 bp Feature: domain Description: OYE_YqiM_FMN Location: 364391 3-3644936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10666 (ammonium transporter AmtB), RVT-GII, GIIM (pfam08388), gshA_ferroox (TIGR02049), PRK05246 (glutathione synthetase; Provisional), PqiA (pfam04403), PerM (COG0628), COG3448 (CBS-domain-containing membrane protein ), ClcA (COG0038), CBS_pair_Sp...
COG3748 (Uncharacterized membrane protein ), Gdt1 (COG2119), Delta12-FADS-like (cd03507), DUF4055 (pfam13264), Phage_Mu_F (pfam04233), OYE_YqiM_FMN (cd02932), TIGR02118 (conserved hypothetical protein), DUF3085 (pfam11284), STE14 (COG2020), SapB (smart00741)
KfrA_N (pfam11740), xerC (PRK01287), Mrr_cat (pfam04471), RVT_N (pfam13655), YkfC (COG3344), DUF932 (pfam06067), Spo0J (COG1475), PBP1_ABC_transporter_LIVBP_like, Methyltransf_31 (pfam13847), Mplasa_alph_rch (TIGR04523)
GT4_TuaH-like (cd04950), Glycos_transf_2 (pfam00535), Acetyltransf_7 (pfam13508), DUF1778 (pfam08681), COG4644 (Transposase and inactivated derivatives, TnpA family ), DDE_Tnp_Tn3 (pfam01526), DUF3701 (pfam12482), xerD (PRK02436)

Seq: CP014845.1 Cupriavidus nantongensis strain X1 chromosome 2, complete sequence (2456269 bp)
Overview 1 RT 1: 623192-629871 bp 2 RT 2: 754901-762114 bp Neighborhood of RT #1 [623192, 629909] PQQ_enz_alc_DH CytC552 RVT-GII HTH_LacI PBP1_LacI_like_8 LysR Neighborhood of RT #2 [754901, 762152] sulfatase_like SGSH LysR RVT-GII GIIM TauE eutD Feature: gene Location: 623192-624955 bp Feature: domain Description: PQQ_enz_alc_DH Location: 623273-624863 bp Feature: domain Description: PQQ_enz_alc_DH Location: 62 32 73-62 4863 bp Feature: gene Location: 625050-625373 bp Feature: domain Description: CytC552 Location: 625095-625365 bp Feature: domain Description: CytC552 Location: 62 5095-62 5365 bp Feature: gene Location: 625978-627374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626311-626929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 6311-62 692 9 bp Feature: gene Location: 627858-628895 bp Feature: domain Description: HTH_LacI Location: 627906-628053 bp Feature: domain Description: HTH_LacI Location: 62 7906-62 8053 bp Feature: domain Description: PBP1_LacI_like_8 Location: 628071-628878 bp Feature: domain Description: PBP1_LacI_like_8 Location: 62 8071-62 8878 bp Feature: gene Location: 628974-629909 bp Feature: domain Description: LysR Location: 628977-629871 bp Feature: domain Description: LysR Location: 62 8977-62 9871 bp Feature: gene Location: 754901-756502 bp Feature: domain Description: sulfatase_like Location: 754925-756191 bp Feature: domain Description: sulfatase_like Location: 75492 5-756191 bp Feature: domain Description: SGSH Location: 756353-756458 bp Feature: domain Description: SGSH Location: 756353-756458 bp Feature: gene Location: 756666-757574 bp Feature: domain Description: LysR Location: 756690-757569 bp Feature: domain Description: LysR Location: 756690-757569 bp Feature: gene Location: 758434-759831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758767-759385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758767-759385 bp Feature: domain Description: GIIM Note: maturase Location: 759436-759661 bp Feature: domain Description: GIIM Note: maturase Location: 759436-759661 bp Feature: gene Location: 760354-761124 bp Feature: domain Description: TauE Location: 760402-761092 bp Feature: domain Description: TauE Location: 760402 -761092 bp Feature: gene Location: 761121-762152 bp Feature: domain Description: eutD Location: 761139-762114 bp Feature: domain Description: eutD Location: 761139-762 114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PQQ_enz_alc_DH (TIGR03075), CytC552 (COG4654), RVT-GII, HTH_LacI (cd01392), PBP1_LacI_like_8, LysR (COG0583), sulfatase_like (cd16156), SGSH (cd16027), GIIM (pfam08388), TauE (pfam01925)
eutD (PRK09653)