myRT

myRT report for GCA_001598335.1_ASM159833v1

Download annotations/find similar RTs

Seq: BCYT01000001.1 Sphingobium abikonense NBRC 16140 DNA, contig: SAB01S_CON0001_0001, whole genome shotgun sequence (443385 bp)
Overview 1 RT 1: 14500-24112 bp Neighborhood of RT #1 [14500, 24135] ParE RVT-G2L4 uvrA COG2931 COG2931 HemolysinCabind HemolysinCabind COG2931 HemolysinCabind COG2931 COG2931 Feature: gene Location: 14500-14847 bp Feature: gene Location: 14924-15199 bp Feature: domain Description: ParE Location: 14927-15197 bp Feature: domain Description: ParE Location: 1 4927-1 51 97 bp Feature: gene Location: 16328-17290 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 16340-16847 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1 6340-1 6847 bp Feature: gene Location: 17300-20368 bp Feature: domain Description: uvrA Location: 17390-20342 bp Feature: domain Description: uvrA Location: 1 7390-20342 bp Feature: gene Location: 20575-24135 bp Feature: domain Description: COG2931 Location: 20584-20725 bp Feature: domain Description: COG2931 Location: 20584-20725 bp Feature: domain Description: COG2931 Location: 20794-21232 bp Feature: domain Description: COG2931 Location: 20794-21 232 bp Feature: domain Description: HemolysinCabind Location: 21418-21481 bp Feature: domain Description: HemolysinCabind Location: 21 41 8-21 481 bp Feature: domain Description: HemolysinCabind Location: 21532-21616 bp Feature: domain Description: HemolysinCabind Location: 21 532-21 61 6 bp Feature: domain Description: COG2931 Location: 21694-22180 bp Feature: domain Description: COG2931 Location: 21 694-221 80 bp Feature: domain Description: HemolysinCabind Location: 22423-22492 bp Feature: domain Description: HemolysinCabind Location: 22423-22492 bp Feature: domain Description: COG2931 Location: 22660-23218 bp Feature: domain Description: COG2931 Location: 22660-2321 8 bp Feature: domain Description: COG2931 Location: 23320-24112 bp Feature: domain Description: COG2931 Location: 23320-241 1 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), RVT-G2L4, uvrA (PRK00349), COG2931 (Ca2+-binding protein, RTX toxin-related ), HemolysinCabind (pfam00353)

Seq: BCYT01000013.1 Sphingobium abikonense NBRC 16140 DNA, contig: SAB01S_CON0013_0001, whole genome shotgun sequence (86281 bp)
Overview 1 RT 1: 9411-16201 bp Neighborhood of RT #1 [9411, 16443] BHL RVT_N RVT-GII YkfC TraI_TIGR TraI_TIGR TraI_TIGR TraI_TIGR Feature: gene Location: 9411-9998 bp Feature: gene Location: 10173-10340 bp Feature: domain Description: BHL Location: 10176-10332 bp Feature: domain Description: BHL Location: 10176-10332 bp Feature: gene Location: 10949-12421 bp Feature: domain Description: RVT_N Location: 10997-11234 bp Feature: domain Description: RVT_N Location: 10997-112 34 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11285-11924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 85-1192 4 bp Feature: domain Description: YkfC Location: 12005-12269 bp Feature: domain Description: YkfC Location: 12 005-12 2 69 bp Feature: gene Location: 12801-13133 bp Feature: gene Location: 13411-16443 bp Feature: domain Description: TraI_TIGR Location: 13414-14293 bp Feature: domain Description: TraI_TIGR Location: 13414-142 93 bp Feature: domain Description: TraI_TIGR Location: 14434-15349 bp Feature: domain Description: TraI_TIGR Location: 14434-15349 bp Feature: domain Description: TraI_TIGR Location: 15388-15949 bp Feature: domain Description: TraI_TIGR Location: 15388-15949 bp Feature: domain Description: TraI_TIGR Location: 15973-16201 bp Feature: domain Description: TraI_TIGR Location: 15973-162 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BHL (smart00411), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), TraI_TIGR (TIGR02760)