myRT

myRT report for GCA_001598835.1_ASM159883v1

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Seq: BCZR01000007.1 Vibrio fluvialis NBRC 103150 DNA, contig: VF1_CON0006_0001, whole genome shotgun sequence (274587 bp)
Overview 1 RT 1: 106545-114618 bp Neighborhood of RT #1 [106545, 114618] groEL RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII GIIM HNHc Feature: gene Location: 106545-108182 bp Feature: domain Description: groEL Location: 106551-108171 bp Feature: domain Description: groEL Location: 1 06551 -1 081 71 bp Feature: gene Location: 108250-108531 bp Feature: gene Location: 109191-110864 bp Feature: domain Description: RVT_N Location: 109263-109506 bp Feature: domain Description: RVT_N Location: 1 09263-1 09506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109551-110196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 09551 -1 1 01 96 bp Feature: domain Description: GIIM Note: maturase Location: 110247-110481 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 0247-1 1 0481 bp Feature: domain Description: HNHc Note: nucleases Location: 110709-110859 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 0709-1 1 0859 bp Feature: gene Location: 111196-111342 bp Feature: gene Location: 111383-111664 bp Feature: gene Location: 112324-114033 bp Feature: domain Description: RVT_N Location: 112396-112639 bp Feature: domain Description: RVT_N Location: 1 1 2396-1 1 2639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112684-113329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 2684-1 1 3329 bp Feature: domain Description: GIIM Note: maturase Location: 113380-113614 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 3380-1 1 361 4 bp Feature: domain Description: HNHc Note: nucleases Location: 113842-113992 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 3842-1 1 3992 bp Feature: gene Location: 114071-114373 bp Feature: gene Location: 114427-114618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BCZR01000015.1 Vibrio fluvialis NBRC 103150 DNA, contig: VF1_CON0014_0001, whole genome shotgun sequence (136674 bp)
Overview 1 RT 1: 125548-129443 bp Neighborhood of RT #1 [125548, 129499] RadC RVT-UG7 GepA Feature: gene Location: 125548-126021 bp Feature: domain Description: RadC Location: 125581-126019 bp Feature: domain Description: RadC Location: 12 5581-12 6019 bp Feature: gene Location: 126238-126375 bp Feature: gene Location: 126441-128078 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 126879-127278 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 12 6879-12 72 78 bp Feature: gene Location: 128066-128812 bp Feature: gene Location: 129032-129499 bp Feature: domain Description: GepA Location: 129050-129443 bp Feature: domain Description: GepA Location: 12 9050-12 9443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RadC (pfam04002), RVT-UG7, GepA (COG3600)