myRT

myRT report for GCA_001601665.1_ASM160166v1

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Seq: LOHJ01000009.1 Pseudomonas aeruginosa strain 105857 LT19_contig000009, whole genome shotgun sequence (426499 bp)
Overview 1 RT 1: 331972-342706 bp Neighborhood of RT #1 [331972, 342708] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 331972-332307 bp Feature: domain Description: NERD Location: 332071-332242 bp Feature: domain Description: NERD Location: 332071 -332242 bp Feature: gene Location: 332400-333521 bp Feature: domain Description: COG3177 Location: 332418-333510 bp Feature: domain Description: COG31 77 Location: 33241 8-33351 0 bp Feature: gene Location: 334245-335930 bp Feature: RT Description: RVT_N Location: 334302-334542 bp Feature: RT Description: RVT_N Location: 334302-334542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334590-335226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334590-335226 bp Feature: domain Description: GIIM Note: maturase Location: 335280-335511 bp Feature: domain Description: GIIM Note: maturase Location: 335280-33551 1 bp Feature: domain Description: HNH Note: nucleases Location: 335763-335901 bp Feature: domain Description: HNH Note: nucleases Location: 335763-335901 bp Feature: gene Location: 337011-340748 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 337119-337776 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3371 1 9-337776 bp Feature: domain Description: PRK09776 Location: 337989-338460 bp Feature: domain Description: PRK09776 Location: 337989-338460 bp Feature: domain Description: PAS Location: 338532-339042 bp Feature: domain Description: PAS Location: 338532-339042 bp Feature: domain Description: PRK10060 Location: 339051-340698 bp Feature: domain Description: PRK1 0060 Location: 339051 -340698 bp Feature: gene Location: 340855-342708 bp Feature: domain Description: PRK05658 Location: 340867-342706 bp Feature: domain Description: PRK05658 Location: 340867-342706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)