myRT

myRT report for GCA_001601745.1_ASM160174v1

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Seq: LOHH01000012.1 Pseudomonas aeruginosa strain 105819 LT18_contig000012, whole genome shotgun sequence (466403 bp)
Overview 1 RT 1: 50116-58286 bp 2 RT 2: 74550-84561 bp 3 RT 3: 119971-125907 bp Neighborhood of RT #1 [50116, 58294] COG3178 RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74550, 84821] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH Abi_2 Neighborhood of RT #3 [119971, 125907] RVT-GII GIIM Feature: gene Location: 50116-51132 bp Feature: domain Description: COG3178 Location: 50119-51118 bp Feature: domain Description: COG31 78 Location: 501 1 9-51 1 1 8 bp Feature: gene Location: 51429-51563 bp Feature: gene Location: 52807-54117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52810-53386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5281 0-53386 bp Feature: domain Description: YkfC Location: 53593-53746 bp Feature: domain Description: YkfC Location: 53593-53746 bp Feature: domain Description: HNH Note: nucleases Location: 53923-54061 bp Feature: domain Description: HNH Note: nucleases Location: 53923-54061 bp Feature: gene Location: 54250-57021 bp Feature: domain Description: LptD Location: 54445-57007 bp Feature: domain Description: LptD Location: 54445-57007 bp Feature: gene Location: 57002-58294 bp Feature: domain Description: PRK10770 Location: 57092-58286 bp Feature: domain Description: PRK1 0770 Location: 57092-58286 bp Feature: gene Location: 74550-76403 bp Feature: domain Description: PRK05658 Location: 74562-76401 bp Feature: domain Description: PRK05658 Location: 74562-76401 bp Feature: gene Location: 76510-80247 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76618-77275 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7661 8-77275 bp Feature: domain Description: PRK09776 Location: 77488-77959 bp Feature: domain Description: PRK09776 Location: 77488-77959 bp Feature: domain Description: PAS Location: 78031-78541 bp Feature: domain Description: PAS Location: 78031 -78541 bp Feature: domain Description: PRK10060 Location: 78550-80197 bp Feature: domain Description: PRK1 0060 Location: 78550-801 97 bp Feature: gene Location: 81328-83013 bp Feature: RT Description: RVT_N Location: 81385-81625 bp Feature: RT Description: RVT_N Location: 81 385-81 625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81673-82309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 673-82309 bp Feature: domain Description: GIIM Note: maturase Location: 82363-82594 bp Feature: domain Description: GIIM Note: maturase Location: 82363-82594 bp Feature: domain Description: HNH Note: nucleases Location: 82846-82984 bp Feature: domain Description: HNH Note: nucleases Location: 82846-82984 bp Feature: gene Location: 83566-83748 bp Feature: gene Location: 83904-84821 bp Feature: domain Description: Abi_2 Location: 84021-84561 bp Feature: domain Description: Abi_2 Location: 84021 -84561 bp Feature: gene Location: 119971-120507 bp Feature: gene Location: 120913-121341 bp Feature: gene Location: 121606-122931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121867-122482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 867-1 22482 bp Feature: domain Description: GIIM Note: maturase Location: 122536-122764 bp Feature: domain Description: GIIM Note: maturase Location: 1 22536-1 22764 bp Feature: gene Location: 123504-123926 bp Feature: gene Location: 125722-125907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), GIIM (pfam08388), Abi_2 (pfam07751)

Seq: LOHH01000039.1 Pseudomonas aeruginosa strain 105819 LT18_contig000039, whole genome shotgun sequence (46937 bp)
Overview 1 RT 1: 36888-45114 bp Neighborhood of RT #1 [36888, 45191] MscS RVT-Retrons PHP_HisPPase COG4637 COG4637 Feature: gene Location: 36888-37688 bp Feature: domain Description: MscS Location: 36993-37656 bp Feature: domain Description: MscS Location: 36993-37656 bp Feature: gene Location: 38201-39469 bp Feature: gene Location: 39631-40797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39886-40510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39886-40510 bp Feature: gene Location: 41490-41648 bp Feature: gene Location: 42384-45191 bp Feature: domain Description: PHP_HisPPase Location: 42552-43032 bp Feature: domain Description: PHP_HisPPase Location: 42 552 -43032 bp Feature: domain Description: COG4637 Location: 43305-43458 bp Feature: domain Description: COG4637 Location: 43305-43458 bp Feature: domain Description: COG4637 Location: 44688-45114 bp Feature: domain Description: COG4637 Location: 44688-45114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MscS (COG0668), RVT-Retrons, PHP_HisPPase (cd07432), COG4637 (Predicted ATPase )