myRT

myRT report for GCA_001602255.1_ASM160225v1

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Seq: BDAT01000002.1 Alcanivorax sp. NBRC 102028 DNA, contig: ALCSP25_CON0002_0001, whole genome shotgun sequence (397314 bp)
Overview 1 RT 1: 226450-231815 bp Neighborhood of RT #1 [226450, 231815] DUF3592 rhom_GG_sort RVT_N RVT-GII GIIM HNHc Feature: gene Location: 226450-228171 bp Feature: domain Description: DUF3592 Location: 226489-227878 bp Feature: domain Description: DUF3592 Location: 226489-227878 bp Feature: gene Location: 228143-228745 bp Feature: domain Description: rhom_GG_sort Location: 228236-228692 bp Feature: domain Description: rhom_GG_sort Location: 228236-228692 bp Feature: gene Location: 229464-231191 bp Feature: domain Description: RVT_N Location: 229584-229827 bp Feature: domain Description: RVT_N Location: 229584-229827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229872-230517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229872-23051 7 bp Feature: domain Description: GIIM Note: maturase Location: 230568-230802 bp Feature: domain Description: GIIM Note: maturase Location: 230568-230802 bp Feature: domain Description: HNHc Note: nucleases Location: 231015-231174 bp Feature: domain Description: HNHc Note: nucleases Location: 231 01 5-231 1 74 bp Feature: gene Location: 231228-231476 bp Feature: gene Location: 231582-231815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3592 (pfam12158), rhom_GG_sort (TIGR03902), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BDAT01000003.1 Alcanivorax sp. NBRC 102028 DNA, contig: ALCSP25_CON0003_0001, whole genome shotgun sequence (321064 bp)
Overview 1 RT 1: 257650-265273 bp Neighborhood of RT #1 [257650, 265275] PhoE HTH_1 PBP2_Nitroaromatics_like RVT-UG7 PRK00811 PRK05354 Feature: gene Location: 257650-258327 bp Feature: domain Description: PhoE Location: 257653-258292 bp Feature: domain Description: PhoE Location: 2 57653-2 582 92 bp Feature: gene Location: 258615-259547 bp Feature: domain Description: HTH_1 Location: 258639-258816 bp Feature: domain Description: HTH_1 Location: 2 58639-2 58816 bp Feature: domain Description: PBP2_Nitroaromatics_like Location: 258909-259494 bp Feature: domain Description: PBP2 _Nitroaromatics_like Location: 2 58909-2 59494 bp Feature: gene Location: 259885-261486 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 260275-260695 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2 602 75-2 60695 bp Feature: gene Location: 262344-263204 bp Feature: domain Description: PRK00811 Location: 262359-263196 bp Feature: domain Description: PRK00811 Location: 2 62 359-2 63196 bp Feature: gene Location: 263395-265275 bp Feature: domain Description: PRK05354 Location: 263422-265273 bp Feature: domain Description: PRK05354 Location: 2 6342 2 -2 652 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhoE (COG0406), HTH_1 (pfam00126), PBP2_Nitroaromatics_like (cd08417), RVT-UG7, PRK00811 (polyamine aminopropyltransferase), PRK05354 (biosynthetic arginine decarboxylase)