myRT

myRT report for GCA_001604665.1_ASM160466v1

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Seq: LJIT01000035.1 Bacillus cereus strain B4079 scaffold36, whole genome shotgun sequence (72336 bp)
Overview 1 RT 1: 1016-8953 bp Neighborhood of RT #1 [1016, 8997] ARO8 EamA EamA RVT_N RVT-GII GIIM PTR2 DUF4046 DUF4046 Feature: gene Location: 1016-2416 bp Feature: domain Description: ARO8 Location: 1058-2408 bp Feature: domain Description: ARO8 Location: 1 058-2408 bp Feature: gene Location: 2549-3442 bp Feature: domain Description: EamA Location: 2561-2939 bp Feature: domain Description: EamA Location: 2561 -2939 bp Feature: domain Description: EamA Location: 2981-3386 bp Feature: domain Description: EamA Location: 2981 -3386 bp Feature: gene Location: 3818-5464 bp Feature: RT Description: RVT_N Location: 3860-4097 bp Feature: RT Description: RVT_N Location: 3860-4097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4151-4811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 51 -481 1 bp Feature: domain Description: GIIM Note: maturase Location: 4880-5111 bp Feature: domain Description: GIIM Note: maturase Location: 4880-51 1 1 bp Feature: gene Location: 6288-7781 bp Feature: domain Description: PTR2 Location: 6312-7773 bp Feature: domain Description: PTR2 Location: 631 2-7773 bp Feature: gene Location: 8005-8997 bp Feature: domain Description: DUF4046 Location: 8035-8227 bp Feature: domain Description: DUF4046 Location: 8035-8227 bp Feature: domain Description: DUF4046 Location: 8749-8953 bp Feature: domain Description: DUF4046 Location: 8749-8953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ARO8 (COG1167), EamA (pfam00892), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PTR2 (pfam00854), DUF4046 (pfam13255)

Seq: LJIT01000071.1 Bacillus cereus strain B4079 scaffold37, whole genome shotgun sequence (205805 bp)
Overview 1 RT 1: 176234-180544 bp Neighborhood of RT #1 [176234, 180552] RVT-Retrons PinE Feature: gene Location: 176234-176962 bp Feature: gene Location: 177212-178306 bp Feature: gene Location: 178324-179274 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 178366-178981 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 178366-178981 bp Feature: gene Location: 179636-179824 bp Feature: gene Location: 179992-180552 bp Feature: domain Description: PinE Location: 179995-180544 bp Feature: domain Description: PinE Location: 179995-180544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PinE (COG1961)

Seq: LJIT01000042.1 Bacillus cereus strain B4079 scaffold58, whole genome shotgun sequence (37615 bp)
Overview 1 RT 1: 6267-11494 bp 2 RT 2: 16017-25373 bp Neighborhood of RT #1 [6267, 11499] COG4712 RVT-GII beta_clamp Neighborhood of RT #2 [16017, 25903] E1_enzyme_family RVT-GII Intron_maturas2 HNHc PRTRC_ThiF NT_KNTase_like RVT-GII HEPN PRK06850 Feature: gene Location: 6267-6662 bp Feature: gene Location: 6685-7041 bp Feature: domain Description: COG4712 Location: 6694-7036 bp Feature: domain Description: COG4712 Location: 6694-703 6 bp Feature: gene Location: 7803-9701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8118-8820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8118-8820 bp Feature: gene Location: 9914-10306 bp Feature: gene Location: 10387-11499 bp Feature: domain Description: beta_clamp Location: 10390-11494 bp Feature: domain Description: beta_clamp Location: 103 90-11494 bp Feature: gene Location: 16017-16418 bp Feature: gene Location: 16431-16613 bp Feature: domain Description: E1_enzyme_family Location: 16479-16599 bp Feature: domain Description: E1_enzyme_family Location: 16479-16599 bp Feature: gene Location: 17239-19122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17512-18349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17512-183 49 bp Feature: domain Description: Intron_maturas2 Location: 18487-18796 bp Feature: domain Description: Intron_maturas2 Location: 18487-18796 bp Feature: domain Description: HNHc Note: nucleases Location: 18916-19069 bp Feature: domain Description: HNHc Note: nucleases Location: 18916-19069 bp Feature: gene Location: 19374-19916 bp Feature: domain Description: PRTRC_ThiF Location: 19437-19896 bp Feature: domain Description: PRTRC_ThiF Location: 1943 7-19896 bp Feature: gene Location: 19936-20307 bp Feature: gene Location: 20329-20730 bp Feature: domain Description: NT_KNTase_like Location: 20404-20707 bp Feature: domain Description: NT_KNTase_like Location: 20404-20707 bp Feature: gene Location: 21486-23417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21807-22542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21807-22542 bp Feature: gene Location: 23563-24006 bp Feature: domain Description: HEPN Location: 23617-23965 bp Feature: domain Description: HEPN Location: 23 617-23 965 bp Feature: gene Location: 24131-25903 bp Feature: domain Description: PRK06850 Location: 24146-25373 bp Feature: domain Description: PRK06850 Location: 24146-253 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT beta_clamp (cl29549), COG4712 (Uncharacterized protein ), RVT-GII, E1_enzyme_family (cl22428), Intron_maturas2 (pfam01348), HNHc (smart00507), PRTRC_ThiF (TIGR03736), NT_KNTase_like (cd05403), HEPN (smart00748), PRK06850 (hypothetical protein; Provisional)

Seq: LJIT01000031.1 Bacillus cereus strain B4079 scaffold115, whole genome shotgun sequence (2858 bp)
Overview 1 RT 1: 736-2569 bp Neighborhood of RT #1 [736, 2664] RVT-GII HNHc Feature: gene Location: 736-2664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093-1786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093-1786 bp Feature: domain Description: HNHc Note: nucleases Location: 2404-2569 bp Feature: domain Description: HNHc Note: nucleases Location: 24 04 -2569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: LJIT01000133.1 Bacillus cereus strain B4079 scaffold84, whole genome shotgun sequence (12181 bp)
Overview 1 RT 1: 9042-11940 bp Neighborhood of RT #1 [9042, 12104] RVT-GII GIIM Feature: gene Location: 9042-9281 bp Feature: gene Location: 9304-10101 bp Feature: gene Location: 10813-11727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11038-11653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11038-1165 3 bp Feature: gene Location: 11724-12104 bp Feature: domain Description: GIIM Note: maturase Location: 11727-11940 bp Feature: domain Description: GIIM Note: maturase Location: 11727-11940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LJIT01000006.1 Bacillus cereus strain B4079 scaffold33, whole genome shotgun sequence (35574 bp)
Overview 1 RT 1: 3582-8040 bp Neighborhood of RT #1 [3582, 8093] ComJ RVT-GII Intron_maturas2 HNHc HTH_MlrA-like_sg1 DUF3967 Feature: gene Location: 3582-3971 bp Feature: domain Description: ComJ Location: 3588-3960 bp Feature: domain Description: ComJ Location: 3588-396 0 bp Feature: gene Location: 4007-4171 bp Feature: gene Location: 4239-6032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4482-5313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4482-5313 bp Feature: domain Description: Intron_maturas2 Location: 5394-5682 bp Feature: domain Description: Intron_maturas2 Location: 5394-56 82 bp Feature: domain Description: HNHc Note: nucleases Location: 5862-6003 bp Feature: domain Description: HNHc Note: nucleases Location: 586 2-6 003 bp Feature: gene Location: 6637-6954 bp Feature: gene Location: 7344-8093 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 7359-7515 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 7359-7515 bp Feature: domain Description: DUF3967 Location: 7947-8040 bp Feature: domain Description: DUF396 7 Location: 7947-8040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComJ (pfam11033), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_MlrA-like_sg1 (cd04764), DUF3967 (pfam13152)

Seq: LJIT01000111.1 Bacillus cereus strain B4079 scaffold43, whole genome shotgun sequence (47807 bp)
Overview 1 RT 1: 7-12400 bp Neighborhood of RT #1 [7, 12400] RVT-GII AdoMet_MTases DEXHc_Snf DEXHc_Snf RVT_N RVT-GII GIIM HNH RVT-GII Intron_maturas2 HNHc Feature: gene Location: 7-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202-937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202-937 bp Feature: gene Location: 1574-1687 bp Feature: gene Location: 1954-3075 bp Feature: domain Description: AdoMet_MTases Location: 2095-2467 bp Feature: domain Description: AdoMet_MTases Location: 2095-2467 bp Feature: gene Location: 3091-3318 bp Feature: gene Location: 3390-5975 bp Feature: domain Description: DEXHc_Snf Location: 4176-4539 bp Feature: domain Description: DEXHc_Snf Location: 417 6-4539 bp Feature: domain Description: DEXHc_Snf Location: 4905-5178 bp Feature: domain Description: DEXHc_Snf Location: 4905-517 8 bp Feature: gene Location: 6547-8358 bp Feature: RT Description: RVT_N Location: 6601-6847 bp Feature: RT Description: RVT_N Location: 6601-6847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6901-7555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6901-7 555 bp Feature: domain Description: GIIM Note: maturase Location: 7618-7852 bp Feature: domain Description: GIIM Note: maturase Location: 7 618-7 852 bp Feature: domain Description: HNH Note: nucleases Location: 8092-8227 bp Feature: domain Description: HNH Note: nucleases Location: 8092-8227 bp Feature: gene Location: 8985-10778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9246-10047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9246-10047 bp Feature: domain Description: Intron_maturas2 Location: 10161-10401 bp Feature: domain Description: Intron_maturas2 Location: 10161-10401 bp Feature: domain Description: HNHc Note: nucleases Location: 10575-10734 bp Feature: domain Description: HNHc Note: nucleases Location: 1057 5-107 34 bp Feature: gene Location: 11092-11670 bp Feature: gene Location: 11687-12400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT-GII, DEXHc_Snf (cd17919), RVT_N (pfam13655), GIIM (pfam08388), HNH (pfam01844), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LJIT01000010.1 Bacillus cereus strain B4079 scaffold117, whole genome shotgun sequence (4268 bp)
Overview 1 RT 1: 734-4186 bp Neighborhood of RT #1 [734, 4186] RVT-GII HNHc AAA_10 Feature: gene Location: 734-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1739 bp Feature: domain Description: HNHc Note: nucleases Location: 2318-2450 bp Feature: domain Description: HNHc Note: nucleases Location: 2318 -2450 bp Feature: gene Location: 2824-3702 bp Feature: domain Description: AAA_10 Location: 2830-3586 bp Feature: domain Description: AAA_10 Location: 28 30-358 6 bp Feature: gene Location: 3704-4186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, HNHc (smart00507)

Seq: LJIT01000092.1 Bacillus cereus strain B4079 scaffold60, whole genome shotgun sequence (22073 bp)
Overview 1 RT 1: 106-5018 bp Neighborhood of RT #1 [106, 5749] RVT-GII Intron_maturas2 HNHc Replic_Relax Feature: gene Location: 106-1923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1201 bp Feature: domain Description: Intron_maturas2 Location: 1282-1573 bp Feature: domain Description: Intron_maturas2 Location: 1282-1573 bp Feature: domain Description: HNHc Note: nucleases Location: 1720-1897 bp Feature: domain Description: HNHc Note: nucleases Location: 1720-189 7 bp Feature: gene Location: 2539-4227 bp Feature: gene Location: 4199-5749 bp Feature: domain Description: Replic_Relax Location: 4295-5018 bp Feature: domain Description: Replic_Relax Location: 429 5-5018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Replic_Relax (pfam13814)

Seq: LJIT01000046.1 Bacillus cereus strain B4079 scaffold15, whole genome shotgun sequence (85764 bp)
Overview 1 RT 1: 17031-24145 bp Neighborhood of RT #1 [17031, 24165] LPD1 RVT-GII HNHc DUF3854 T_den_put_tspse Feature: gene Location: 17031-18806 bp Feature: domain Description: LPD1 Location: 18555-18750 bp Feature: domain Description: LPD1 Location: 18555-18750 bp Feature: gene Location: 18796-19326 bp Feature: gene Location: 20062-21945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20383-21121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20383-21121 bp Feature: domain Description: HNHc Note: nucleases Location: 21679-21826 bp Feature: domain Description: HNHc Note: nucleases Location: 21679-21826 bp Feature: gene Location: 22137-22952 bp Feature: domain Description: DUF3854 Location: 22569-22920 bp Feature: domain Description: DUF3854 Location: 22569-22920 bp Feature: gene Location: 23281-24165 bp Feature: domain Description: T_den_put_tspse Location: 23323-24145 bp Feature: domain Description: T_den_put_tspse Location: 23323-24145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD1 (pfam18796), RVT-GII, HNHc (smart00507), DUF3854 (pfam12965), T_den_put_tspse (TIGR01784)