myRT

myRT report for GCA_001605875.1_ASM160587v1

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Seq: LRXM01000277.1 Pseudomonas aeruginosa strain CMC_VB_PA_B22862 contig_79, whole genome shotgun sequence (30848 bp)
Overview 1 RT 1: 12454-18621 bp Neighborhood of RT #1 [12454, 18621] DUF772 RVT-GII GIIM Feature: gene Location: 12454-12966 bp Feature: gene Location: 13610-14122 bp Feature: domain Description: DUF772 Location: 13760-13946 bp Feature: domain Description: DUF772 Location: 1 3760-1 3946 bp Feature: gene Location: 14642-15910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14855-15512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4855-1 551 2 bp Feature: domain Description: GIIM Note: maturase Location: 15590-15812 bp Feature: domain Description: GIIM Note: maturase Location: 1 5590-1 581 2 bp Feature: gene Location: 16895-17551 bp Feature: gene Location: 18164-18621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: LRXM01000256.1 Pseudomonas aeruginosa strain CMC_VB_PA_B22862 contig_6, whole genome shotgun sequence (159288 bp)
Overview 1 RT 1: 49299-57948 bp 2 RT 2: 74422-84716 bp Neighborhood of RT #1 [49299, 58174] NTP_transferase_like_1 COG3178 RVT_N RVT-GII LptD PRK10770 Neighborhood of RT #2 [74422, 84727] PRK05658 PBP2_BvgS_HisK_like sensory_box sensory_box sensory_box sensory_box GGDEF RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49299-49963 bp Feature: domain Description: NTP_transferase_like_1 Location: 49302-49371 bp Feature: domain Description: NTP_transferase_like_1 Location: 49302 -49371 bp Feature: gene Location: 49968-50984 bp Feature: domain Description: COG3178 Location: 49971-50970 bp Feature: domain Description: COG3178 Location: 49971-50970 bp Feature: gene Location: 52257-53968 bp Feature: RT Description: RVT_N Location: 52314-52557 bp Feature: RT Description: RVT_N Location: 52 314-52 557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52602-52977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 602 -52 977 bp Feature: gene Location: 54101-56902 bp Feature: domain Description: LptD Location: 54296-56888 bp Feature: domain Description: LptD Location: 542 96-56888 bp Feature: gene Location: 56883-58174 bp Feature: domain Description: PRK10770 Location: 56973-57948 bp Feature: domain Description: PRK10770 Location: 56973-57948 bp Feature: gene Location: 74422-76273 bp Feature: domain Description: PRK05658 Location: 74434-75043 bp Feature: domain Description: PRK05658 Location: 74434-75043 bp Feature: gene Location: 76380-80115 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76488-77145 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76488-77145 bp Feature: domain Description: sensory_box Location: 77310-77676 bp Feature: domain Description: sensory_box Location: 77310-77676 bp Feature: domain Description: sensory_box Location: 77688-78048 bp Feature: domain Description: sensory_box Location: 77688-78048 bp Feature: domain Description: sensory_box Location: 78060-78426 bp Feature: domain Description: sensory_box Location: 78060-7842 6 bp Feature: domain Description: sensory_box Location: 78441-78792 bp Feature: domain Description: sensory_box Location: 78441-78792 bp Feature: domain Description: GGDEF Location: 78807-79278 bp Feature: domain Description: GGDEF Location: 78807-792 78 bp Feature: gene Location: 81196-82881 bp Feature: RT Description: RVT_N Location: 81253-81493 bp Feature: RT Description: RVT_N Location: 812 53-81493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81541-82177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81541-82 177 bp Feature: domain Description: GIIM Note: maturase Location: 82231-82462 bp Feature: domain Description: GIIM Note: maturase Location: 82 2 31-82 462 bp Feature: domain Description: HNH Note: nucleases Location: 82714-82852 bp Feature: domain Description: HNH Note: nucleases Location: 82 714-82 852 bp Feature: gene Location: 83207-83344 bp Feature: gene Location: 83606-84727 bp Feature: domain Description: COG3177 Location: 83624-84716 bp Feature: domain Description: COG3177 Location: 8362 4-84716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), sensory_box (TIGR00229), GGDEF (TIGR00254)
GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )