myRT

myRT report for GCA_001606615.1_ASM160661v1

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Seq: LOGN01000100.1 Escherichia coli strain STEC 1500 STEC1500_contig_80, whole genome shotgun sequence (5272 bp)
Overview 1 RT 1: 533-3063 bp Neighborhood of RT #1 [533, 3063] RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 533-2311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1 589 bp Feature: domain Description: Intron_maturas2 Location: 1715-1940 bp Feature: domain Description: Intron_maturas2 Location: 1 71 5-1 940 bp Feature: domain Description: HNHc Note: nucleases Location: 2135-2285 bp Feature: domain Description: HNHc Note: nucleases Location: 21 35-2285 bp Feature: gene Location: 2444-2818 bp Feature: domain Description: DUF932 Location: 2462-2783 bp Feature: domain Description: DUF932 Location: 2462-2783 bp Feature: gene Location: 2818-3063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LOGN01000047.1 Escherichia coli strain STEC 1500 STEC1500_contig_32, whole genome shotgun sequence (94485 bp)
Overview 1 RT 1: 85082-88305 bp Neighborhood of RT #1 [85082, 88305] RVT-GII GIIM PHA02517 Feature: gene Location: 85082-85453 bp Feature: gene Location: 85368-85793 bp Feature: gene Location: 85762-87270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86020-86752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8602 0-86752 bp Feature: domain Description: GIIM Note: maturase Location: 86827-87025 bp Feature: domain Description: GIIM Note: maturase Location: 8682 7-8702 5 bp Feature: gene Location: 87351-87839 bp Feature: domain Description: PHA02517 Location: 87354-87828 bp Feature: domain Description: PHA02 517 Location: 87354-8782 8 bp Feature: gene Location: 87922-88305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)