myRT

myRT report for GCA_001606915.1_ASM160691v1

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Seq: LOIE01000075.1 Escherichia coli strain STEC 2499 STEC2499_contig_47, whole genome shotgun sequence (9623 bp)
Overview 1 RT 1: 595-4078 bp Neighborhood of RT #1 [595, 4078] RVT_N RVT-GII GIIM HNHc ArdA Feature: gene Location: 595-2262 bp Ori: KYT96438.1 Feature: domain Description: RVT_N Location: 643-880 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 -1 573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1 624-1 858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: gene Location: 2518-3018 bp Ori: KYT96439.1 Feature: domain Description: ArdA Location: 2542-3007 bp Feature: domain Description: ArdA Location: 2542-3007 bp Feature: gene Location: 3482-4078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ArdA (pfam07275)

Seq: LOIE01000125.1 Escherichia coli strain STEC 2499 STEC2499_contig_92, whole genome shotgun sequence (2405 bp)
Overview 1 RT 1: 621-2265 bp Neighborhood of RT #1 [621, 2321] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 621-2321 bp Ori: KYT91953.1 Feature: domain Description: RVT_N Location: 675-918 bp Feature: domain Description: RVT_N Location: 675-918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1599 bp Feature: domain Description: GIIM Note: maturase Location: 1650-1884 bp Feature: domain Description: GIIM Note: maturase Location: 1650-1884 bp Feature: domain Description: HNHc Note: nucleases Location: 2115-2265 bp Feature: domain Description: HNHc Note: nucleases Location: 2 115-2 2 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LOIE01000013.1 Escherichia coli strain STEC 2499 STEC2499_contig_11, whole genome shotgun sequence (298184 bp)
Overview 1 RT 1: 290560-297023 bp Neighborhood of RT #1 [290560, 298021] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG3 RVT-UG8 Feature: gene Location: 290560-293127 bp Ori: KYU05637.1 Feature: domain Description: mutS1 Location: 290596-293116 bp Feature: domain Description: mutS1 Location: 290596-293 116 bp Feature: gene Location: 293287-294747 bp Ori: KYU05621.1 Feature: domain Description: INT_Rci_Hp1_C Location: 293662-293869 bp Feature: domain Description: INT_Rci_Hp1_C Location: 293 662-293 869 bp Feature: domain Description: INT_P4_C Location: 294088-294625 bp Feature: domain Description: INT_P4_C Location: 294088-294625 bp Feature: gene Location: 294744-296006 bp Ori: KYU05622.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 295026-295521 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 295026-295521 bp Feature: gene Location: 296003-298021 bp Ori: KYU05623.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 296573-297023 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 296573 -297023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG3, RVT-UG8