myRT

myRT report for GCA_001607975.1_ASM160797v1

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Seq: LOGX01000153.1 Escherichia coli strain STEC 2211 STEC2211_contig_58, whole genome shotgun sequence (208283 bp)
Overview 1 RT 1: 163017-169022 bp Neighborhood of RT #1 [163017, 169027] P Q RVT-Retrons DinI Feature: gene Location: 163017-164783 bp Feature: domain Description: P Location: 163044-164778 bp Feature: domain Description: P Location: 1 63044-1 64778 bp Feature: gene Location: 164783-165814 bp Feature: domain Description: Q Location: 164786-165809 bp Feature: domain Description: Q Location: 1 64786-1 65809 bp Feature: gene Location: 165864-167620 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 166008-166629 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 66008-1 66629 bp Feature: gene Location: 168266-168601 bp Feature: gene Location: 168794-169027 bp Feature: domain Description: DinI Location: 168836-169022 bp Feature: domain Description: DinI Location: 1 68836-1 69022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons, DinI (pfam06183)

Seq: LOGX01000138.1 Escherichia coli strain STEC 2211 STEC2211_contig_44, whole genome shotgun sequence (41160 bp)
Overview 1 RT 1: 543-4631 bp Neighborhood of RT #1 [543, 4642] RVT-GII GIIM PRK01271 RutF Feature: gene Location: 543-941 bp Feature: gene Location: 1586-1930 bp Feature: gene Location: 2456-3778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2732-3389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 732 -3389 bp Feature: domain Description: GIIM Note: maturase Location: 3473-3683 bp Feature: domain Description: GIIM Note: maturase Location: 3473-3683 bp Feature: gene Location: 3926-4069 bp Feature: domain Description: PRK01271 Location: 3929-4067 bp Feature: domain Description: PRK012 71 Location: 392 9-4067 bp Feature: gene Location: 4073-4642 bp Feature: domain Description: RutF Location: 4127-4631 bp Feature: domain Description: RutF Location: 412 7-4631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK01271 (tautomerase PptA), RutF (TIGR03615)