myRT

myRT report for GCA_001608245.1_ASM160824v1

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Seq: LOIZ01000068.1 Escherichia coli strain STEC 3031 STEC3031_contig_16, whole genome shotgun sequence (169499 bp)
Overview 1 RT 1: 87170-94402 bp Neighborhood of RT #1 [87170, 94437] Psu PRK09678 RVT-UG8 RVT-UG3 PRK09692 proA Feature: gene Location: 87170-87724 bp Ori: KYV10782.1 Feature: domain Description: Psu Location: 87194-87704 bp Feature: domain Description: Psu Location: 871 94-87704 bp Feature: gene Location: 87726-87998 bp Ori: KYV10783.1 Feature: domain Description: PRK09678 Location: 87735-87903 bp Feature: domain Description: PRK09678 Location: 87735-87903 bp Feature: gene Location: 88447-90450 bp Ori: KYV10784.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 88942-89389 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 88942-89389 bp Feature: gene Location: 90454-91650 bp Ori: KYV10785.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 90739-91201 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 90739-91 201 bp Feature: gene Location: 91652-92830 bp Ori: KYV10786.1 Feature: domain Description: PRK09692 Location: 91658-92816 bp Feature: domain Description: PRK09692 Location: 91 658-9281 6 bp Feature: gene Location: 93184-94437 bp Ori: KYV10787.1 Feature: domain Description: proA Location: 93211-94402 bp Feature: domain Description: proA Location: 9321 1 -94402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG8, RVT-UG3, PRK09692 (Integrase; provisional), proA (TIGR00407)

Seq: LOIZ01000142.1 Escherichia coli strain STEC 3031 STEC3031_contig_37, whole genome shotgun sequence (3226 bp)
Overview 1 RT 1: 853-3225 bp Neighborhood of RT #1 [853, 3226] RVT-GII Intron_maturas2 HNHc PRK13732 Feature: gene Location: 853-2754 bp Ori: KYV04542.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1120-1951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 0-1951 bp Feature: domain Description: Intron_maturas2 Location: 2065-2323 bp Feature: domain Description: Intron_maturas2 Location: 2 065-2 32 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2497-2659 bp Feature: domain Description: HNHc Note: nucleases Location: 2 497-2 659 bp Feature: gene Location: 2904-3226 bp Feature: domain Description: PRK13732 Location: 2907-3225 bp Feature: domain Description: PRK13732 Location: 2 907-32 2 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)