myRT

myRT report for GCA_001608575.1_ASM160857v1

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Seq: LRFL01000030.1 Vibrio parahaemolyticus strain 09-4665 contig36, whole genome shotgun sequence (425238 bp)
Overview 1 RT 1: 67795-71032 bp Neighborhood of RT #1 [67795, 71032] InsQ RVT-GII GIIM Feature: gene Location: 67795-68256 bp Feature: domain Description: InsQ Location: 67825-68215 bp Feature: domain Description: InsQ Location: 67825-6821 5 bp Feature: gene Location: 68385-68627 bp Feature: gene Location: 68936-69817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68951-69299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68951 -69299 bp Feature: domain Description: GIIM Note: maturase Location: 69419-69572 bp Feature: domain Description: GIIM Note: maturase Location: 6941 9-69572 bp Feature: gene Location: 70428-70694 bp Feature: gene Location: 70754-71032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, GIIM (pfam08388)

Seq: LRFL01000050.1 Vibrio parahaemolyticus strain 09-4665 contig54, whole genome shotgun sequence (307466 bp)
Overview 1 RT 1: 124038-129118 bp Neighborhood of RT #1 [124038, 129216] Mrr_cat zf-C4_Topoisom RVT-Retrons HipA_So_like couple_hipB Feature: gene Location: 124038-124853 bp Ori: KYY54098.1 Feature: domain Description: Mrr_cat Location: 124338-124668 bp Feature: domain Description: Mrr_cat Location: 12 4338-12 4668 bp Feature: domain Description: zf-C4_Topoisom Location: 124737-124845 bp Feature: domain Description: zf-C4_Topoisom Location: 12 4737-12 4845 bp Feature: gene Location: 125478-126284 bp Feature: gene Location: 126407-127390 bp Ori: KYY54099.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126572-127127 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 6572 -12 712 7 bp Feature: gene Location: 127482-128888 bp Ori: KYY54100.1 Feature: domain Description: HipA_So_like Location: 127563-128844 bp Feature: domain Description: HipA_So_like Location: 12 7563-12 8844 bp Feature: gene Location: 128881-129216 bp Ori: KYY54101.1 Feature: domain Description: couple_hipB Location: 128950-129118 bp Feature: domain Description: couple_hipB Location: 12 8950-12 9118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396), RVT-Retrons, HipA_So_like (cd17809), couple_hipB (TIGR03070)

Seq: LRFL01000023.1 Vibrio parahaemolyticus strain 09-4665 contig3, whole genome shotgun sequence (115901 bp)
Overview 1 RT 1: 105870-115555 bp Neighborhood of RT #1 [105870, 115638] DUF2384 RVT-UG1 HsdR Feature: gene Location: 105870-106109 bp Ori: KYY62209.1 Feature: domain Description: DUF2384 Location: 105957-106098 bp Feature: domain Description: DUF23 84 Location: 105957-106098 bp Feature: gene Location: 106387-108300 bp Feature: gene Location: 108754-112620 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 109441-109969 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 109441-109969 bp Feature: gene Location: 112690-115638 bp Feature: domain Description: HsdR Location: 112726-115555 bp Feature: domain Description: HsdR Location: 112726-115555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2384 (pfam09722), RVT-UG1, HsdR (COG4096)