myRT

myRT report for GCA_001608755.1_ASM160875v1

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Seq: LRFT01000007.1 Vibrio parahaemolyticus strain A5Z1022 contig15, whole genome shotgun sequence (655093 bp)
Overview 1 RT 1: 334515-338107 bp Neighborhood of RT #1 [334515, 338130] HTH_XRE RVT-Retrons INT_C_like_1 AlaE Feature: gene Location: 334515-334733 bp Feature: gene Location: 334798-335073 bp Ori: KYY36193.1 Feature: domain Description: HTH_XRE Location: 334813-334978 bp Feature: domain Description: HTH_XRE Location: 33481 3-334978 bp Feature: gene Location: 335066-336205 bp Ori: KYY36194.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 335207-335744 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 335207-335744 bp Feature: gene Location: 336183-337364 bp Feature: domain Description: INT_C_like_1 Location: 336750-337254 bp Feature: domain Description: INT_C_like_1 Location: 336750-337254 bp Feature: gene Location: 337681-338130 bp Ori: KYY36195.1 Feature: domain Description: AlaE Location: 337705-338107 bp Feature: domain Description: AlaE Location: 337705-3381 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, INT_C_like_1 (cd01184), AlaE (pfam06610)

Seq: LRFT01000008.1 Vibrio parahaemolyticus strain A5Z1022 contig16, whole genome shotgun sequence (847668 bp)
Overview 1 RT 1: 718347-729490 bp Neighborhood of RT #1 [718347, 729501] HTH_Tnp_ISL3 DDE_Tnp_ISL3 HsdR RVT-UG1 DUF2384 Feature: gene Location: 718347-719363 bp Ori: KYY35318.1 Feature: domain Description: HTH_Tnp_ISL3 Location: 718422-718569 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 71842 2 -718569 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 718617-719334 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 718617-719334 bp Feature: gene Location: 719736-722684 bp Feature: domain Description: HsdR Location: 719772-722601 bp Feature: domain Description: HsdR Location: 719772 -72 2 601 bp Feature: gene Location: 722754-726623 bp Ori: KYY35184.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 723441-723969 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 72 3441-72 3969 bp Feature: gene Location: 727077-728984 bp Feature: gene Location: 729262-729501 bp Ori: KYY35186.1 Feature: domain Description: DUF2384 Location: 729349-729490 bp Feature: domain Description: DUF2 384 Location: 72 9349-72 9490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), HsdR (COG4096), RVT-UG1, DUF2384 (pfam09722)