myRT

myRT report for GCA_001609015.1_ASM160901v1

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Seq: LRTH01000035.1 Vibrio parahaemolyticus strain 09-4662 contig40, whole genome shotgun sequence (325936 bp)
Overview 1 RT 1: 246674-249870 bp Neighborhood of RT #1 [246674, 249911] RVT-GII GIIM InsQ Feature: gene Location: 246674-246952 bp Feature: gene Location: 247012-247278 bp Feature: gene Location: 247889-248770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247904-248252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247904-248252 bp Feature: domain Description: GIIM Note: maturase Location: 248372-248525 bp Feature: domain Description: GIIM Note: maturase Location: 248372-248525 bp Feature: gene Location: 249079-249321 bp Feature: gene Location: 249450-249911 bp Feature: domain Description: InsQ Location: 249480-249870 bp Feature: domain Description: InsQ Location: 249480-249870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: LRTH01000020.1 Vibrio parahaemolyticus strain 09-4662 contig27, whole genome shotgun sequence (307702 bp)
Overview 1 RT 1: 178321-183491 bp Neighborhood of RT #1 [178321, 183499] couple_hipB HipA_So_like RVT-Retrons Mrr_cat zf-C4_Topoisom Feature: gene Location: 178321-178656 bp Ori: KYZ40305.1 Feature: domain Description: couple_hipB Location: 178390-178558 bp Feature: domain Description: couple_hipB Location: 178390-178558 bp Feature: gene Location: 178649-180055 bp Ori: KYZ40306.1 Feature: domain Description: HipA_So_like Location: 178730-180011 bp Feature: domain Description: HipA_So_like Location: 178730-180011 bp Feature: gene Location: 180147-181130 bp Ori: KYZ40307.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180312-180867 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180312 -180867 bp Feature: gene Location: 181253-182059 bp Feature: gene Location: 182684-183499 bp Ori: KYZ40308.1 Feature: domain Description: Mrr_cat Location: 182984-183314 bp Feature: domain Description: Mrr_cat Location: 182 984-183314 bp Feature: domain Description: zf-C4_Topoisom Location: 183383-183491 bp Feature: domain Description: zf-C4_Topoisom Location: 183383-183491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT couple_hipB (TIGR03070), HipA_So_like (cd17809), RVT-Retrons, Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396)

Seq: LRTH01000039.1 Vibrio parahaemolyticus strain 09-4662 contig44, whole genome shotgun sequence (115901 bp)
Overview 1 RT 1: 105870-115555 bp Neighborhood of RT #1 [105870, 115638] DUF2384 RVT-UG1 HsdR Feature: gene Location: 105870-106109 bp Ori: KYZ33052.1 Feature: domain Description: DUF2384 Location: 105957-106098 bp Feature: domain Description: DUF23 84 Location: 105957-106098 bp Feature: gene Location: 106387-108300 bp Feature: gene Location: 108754-112620 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 109441-109969 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 109441-109969 bp Feature: gene Location: 112690-115638 bp Feature: domain Description: HsdR Location: 112726-115555 bp Feature: domain Description: HsdR Location: 112726-115555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2384 (pfam09722), RVT-UG1, HsdR (COG4096)