myRT

myRT report for GCA_001609025.1_ASM160902v1

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Seq: LRSX01000016.1 Vibrio parahaemolyticus strain 09-1772 contig23, whole genome shotgun sequence (425238 bp)
Overview 1 RT 1: 354207-357403 bp Neighborhood of RT #1 [354207, 357444] RVT-GII GIIM InsQ Feature: gene Location: 354207-354485 bp Feature: gene Location: 354545-354811 bp Feature: gene Location: 355422-356303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355437-355785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355437-355785 bp Feature: domain Description: GIIM Note: maturase Location: 355905-356058 bp Feature: domain Description: GIIM Note: maturase Location: 355905-356058 bp Feature: gene Location: 356612-356854 bp Feature: gene Location: 356983-357444 bp Feature: domain Description: InsQ Location: 357013-357403 bp Feature: domain Description: InsQ Location: 35701 3-357403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: LRSX01000019.1 Vibrio parahaemolyticus strain 09-1772 contig26, whole genome shotgun sequence (403392 bp)
Overview 1 RT 1: 393361-403046 bp Neighborhood of RT #1 [393361, 403129] DUF2384 RVT-UG1 HsdR Feature: gene Location: 393361-393600 bp Ori: KYY98758.1 Feature: domain Description: DUF2384 Location: 393448-393589 bp Feature: domain Description: DUF2 384 Location: 393448-393589 bp Feature: gene Location: 393878-395791 bp Feature: gene Location: 396245-400111 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 396932-397460 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 396932 -397460 bp Feature: gene Location: 400181-403129 bp Feature: domain Description: HsdR Location: 400217-403046 bp Feature: domain Description: HsdR Location: 4002 17-403046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2384 (pfam09722), RVT-UG1, HsdR (COG4096)

Seq: LRSX01000024.1 Vibrio parahaemolyticus strain 09-1772 contig30, whole genome shotgun sequence (307632 bp)
Overview 1 RT 1: 178251-183421 bp Neighborhood of RT #1 [178251, 183429] couple_hipB HipA_So_like RVT-Retrons Mrr_cat zf-C4_Topoisom Feature: gene Location: 178251-178586 bp Ori: KYY97034.1 Feature: domain Description: couple_hipB Location: 178320-178488 bp Feature: domain Description: couple_hipB Location: 1783 20-178488 bp Feature: gene Location: 178579-179985 bp Ori: KYY97035.1 Feature: domain Description: HipA_So_like Location: 178660-179941 bp Feature: domain Description: HipA_So_like Location: 178660-179941 bp Feature: gene Location: 180077-181060 bp Ori: KYY97036.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180242-180797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180242-180797 bp Feature: gene Location: 181183-181989 bp Feature: gene Location: 182614-183429 bp Ori: KYY97037.1 Feature: domain Description: Mrr_cat Location: 182914-183244 bp Feature: domain Description: Mrr_cat Location: 182914-183 244 bp Feature: domain Description: zf-C4_Topoisom Location: 183313-183421 bp Feature: domain Description: zf-C4_Topoisom Location: 183 3 13 -183 421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT couple_hipB (TIGR03070), HipA_So_like (cd17809), RVT-Retrons, Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396)