myRT

myRT report for GCA_001609175.1_ASM160917v1

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Seq: LRTG01000026.1 Vibrio parahaemolyticus strain A3EZ936 contig32, whole genome shotgun sequence (329336 bp)
Overview 1 RT 1: 261092-264288 bp Neighborhood of RT #1 [261092, 264329] RVT-GII GIIM InsQ Feature: gene Location: 261092-261370 bp Feature: gene Location: 261430-261696 bp Feature: gene Location: 262307-263188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262322-262670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262322-262670 bp Feature: domain Description: GIIM Note: maturase Location: 262790-262943 bp Feature: domain Description: GIIM Note: maturase Location: 262790-262943 bp Feature: gene Location: 263497-263739 bp Feature: gene Location: 263868-264329 bp Feature: domain Description: InsQ Location: 263898-264288 bp Feature: domain Description: InsQ Location: 263898-264288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: LRTG01000043.1 Vibrio parahaemolyticus strain A3EZ936 contig48, whole genome shotgun sequence (5266 bp)
Overview 1 RT 1: 1104-3448 bp Neighborhood of RT #1 [1104, 3448] RVT-UG11 YdcF-like Feature: gene Location: 1104-1871 bp Ori: KYZ26109.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1236-1689 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 12 36-1689 bp Feature: gene Location: 1993-2616 bp Ori: KYZ26114.1 Feature: domain Description: YdcF-like Location: 2140-2542 bp Feature: domain Description: YdcF-like Location: 2 140-2 542 bp Feature: gene Location: 2669-3448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, YdcF-like (cl00630)

Seq: LRTG01000018.1 Vibrio parahaemolyticus strain A3EZ936 contig25, whole genome shotgun sequence (664586 bp)
Overview 1 RT 1: 349591-353183 bp Neighborhood of RT #1 [349591, 353206] HTH_XRE RVT-Retrons INT_C_like_1 AlaE Feature: gene Location: 349591-349809 bp Feature: gene Location: 349874-350149 bp Ori: KYZ34329.1 Feature: domain Description: HTH_XRE Location: 349889-350057 bp Feature: domain Description: HTH_XRE Location: 3 49889-3 50057 bp Feature: gene Location: 350142-351281 bp Ori: KYZ34330.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 350283-350820 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 50283 -3 50820 bp Feature: gene Location: 351259-352440 bp Ori: KYZ34331.1 Feature: domain Description: INT_C_like_1 Location: 351826-352330 bp Feature: domain Description: INT_C_like_1 Location: 3 51826-3 523 3 0 bp Feature: gene Location: 352757-353206 bp Ori: KYZ34332.1 Feature: domain Description: AlaE Location: 352781-353183 bp Feature: domain Description: AlaE Location: 3 52781-3 53 183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, INT_C_like_1 (cd01184), AlaE (pfam06610)

Seq: LRTG01000049.1 Vibrio parahaemolyticus strain A3EZ936 contig7, whole genome shotgun sequence (196311 bp)
Overview 1 RT 1: 123719-130505 bp 2 RT 2: 135199-139964 bp Neighborhood of RT #1 [123719, 130510] AAA_15 AAA_15 RVT-Retrons TrbL_P TrbK_RP4 Neighborhood of RT #2 [135199, 139966] HTH_XRE RVT-Retrons Arm-DNA-bind_3 INT_P4_C guaA Feature: gene Location: 123719-124447 bp Feature: gene Location: 125017-127134 bp Ori: KYZ23866.1 Feature: domain Description: AAA_15 Location: 125020-125434 bp Feature: domain Description: AAA_15 Location: 125020-1254 34 bp Feature: domain Description: AAA_15 Location: 125572-126001 bp Feature: domain Description: AAA_15 Location: 125572-126001 bp Feature: gene Location: 127306-128400 bp Ori: KYZ23867.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127456-128002 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1274 56-128002 bp Feature: gene Location: 128656-130263 bp Ori: KYZ23932.1 Feature: domain Description: TrbL_P Location: 128737-129661 bp Feature: domain Description: TrbL_P Location: 128737-129661 bp Feature: gene Location: 130274-130510 bp Ori: KYZ23868.1 Feature: domain Description: TrbK_RP4 Location: 130301-130505 bp Feature: domain Description: TrbK_RP4 Location: 130301-130505 bp Feature: gene Location: 135199-135417 bp Feature: gene Location: 135481-135768 bp Ori: KYZ23874.1 Feature: domain Description: HTH_XRE Location: 135496-135661 bp Feature: domain Description: HTH_XRE Location: 1354 96-135661 bp Feature: gene Location: 135752-136891 bp Ori: KYZ23875.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 135890-136442 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 135890-1364 4 2 bp Feature: gene Location: 136918-138105 bp Ori: KYZ23876.1 Feature: domain Description: Arm-DNA-bind_3 Location: 136924-137182 bp Feature: domain Description: Arm-DNA-bind_3 Location: 136924 -137182 bp Feature: domain Description: INT_P4_C Location: 137533-138088 bp Feature: domain Description: INT_P4 _C Location: 137533-138088 bp Feature: gene Location: 138413-139966 bp Ori: KYZ23877.1 Gene: guaA Feature: domain Description: guaA Location: 138431-139964 bp Feature: domain Description: guaA Location: 1384 31-139964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, TrbL_P (TIGR02783), TrbK_RP4 (TIGR04359), HTH_XRE (smart00530), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), guaA (PRK00074)