myRT

myRT report for GCA_001609445.1_ASM160944v1

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Seq: LPVL01000043.1 Vibrio parahaemolyticus strain C146 contig48, whole genome shotgun sequence (5266 bp)
Overview 1 RT 1: 1819-3981 bp Neighborhood of RT #1 [1819, 4163] YdcF-like RVT-UG11 Feature: gene Location: 1819-2598 bp Feature: gene Location: 2651-3274 bp Ori: KYX62043.1 Feature: domain Description: YdcF-like Location: 2798-3200 bp Feature: domain Description: YdcF-like Location: 2798-3200 bp Feature: gene Location: 3396-4163 bp Ori: KYX62042.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3528-3981 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 3528-3981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdcF-like (cl00630), RVT-UG11

Seq: LPVL01000004.1 Vibrio parahaemolyticus strain C146 contig12, whole genome shotgun sequence (331140 bp)
Overview 1 RT 1: 261092-264288 bp Neighborhood of RT #1 [261092, 264329] RVT-GII GIIM InsQ Feature: gene Location: 261092-261370 bp Feature: gene Location: 261430-261696 bp Feature: gene Location: 262307-263188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262322-262670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 32 2 -2 62 670 bp Feature: domain Description: GIIM Note: maturase Location: 262790-262943 bp Feature: domain Description: GIIM Note: maturase Location: 2 62 790-2 62 943 bp Feature: gene Location: 263497-263739 bp Feature: gene Location: 263868-264329 bp Feature: domain Description: InsQ Location: 263898-264288 bp Feature: domain Description: InsQ Location: 2 63898-2 642 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: LPVL01000027.1 Vibrio parahaemolyticus strain C146 contig33, whole genome shotgun sequence (247895 bp)
Overview 1 RT 1: 56346-61113 bp 2 RT 2: 65802-72593 bp Neighborhood of RT #1 [56346, 61113] guaA Arm-DNA-bind_3 INT_P4_C RVT-Retrons HTH_XRE Neighborhood of RT #2 [65802, 72593] TrbK_RP4 TrbL_P RVT-Retrons AAA_15 AAA_15 Feature: gene Location: 56346-57899 bp Ori: KYX63481.1 Gene: guaA Feature: domain Description: guaA Location: 56364-57897 bp Feature: domain Description: guaA Location: 563 64-57897 bp Feature: gene Location: 58207-59394 bp Ori: KYX63482.1 Feature: domain Description: Arm-DNA-bind_3 Location: 58213-58471 bp Feature: domain Description: Arm-DNA-bind_3 Location: 58213 -58471 bp Feature: domain Description: INT_P4_C Location: 58822-59377 bp Feature: domain Description: INT_P4_C Location: 58822-593 77 bp Feature: gene Location: 59421-60560 bp Ori: KYX63483.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59559-60111 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59559-60111 bp Feature: gene Location: 60544-60831 bp Ori: KYX63484.1 Feature: domain Description: HTH_XRE Location: 60559-60724 bp Feature: domain Description: HTH_XRE Location: 60559-60724 bp Feature: gene Location: 60895-61113 bp Feature: gene Location: 65802-66038 bp Ori: KYX63490.1 Feature: domain Description: TrbK_RP4 Location: 65829-66033 bp Feature: domain Description: TrbK_RP4 Location: 65829-6603 3 bp Feature: gene Location: 66049-67656 bp Ori: KYX63642.1 Feature: domain Description: TrbL_P Location: 66130-67054 bp Feature: domain Description: TrbL_P Location: 6613 0-67054 bp Feature: gene Location: 67912-69006 bp Ori: KYX63491.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68062-68608 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68062-68608 bp Feature: gene Location: 69178-71295 bp Ori: KYX63492.1 Feature: domain Description: AAA_15 Location: 69181-69595 bp Feature: domain Description: AAA_15 Location: 69181-69595 bp Feature: domain Description: AAA_15 Location: 69733-70162 bp Feature: domain Description: AAA_15 Location: 6973 3 -70162 bp Feature: gene Location: 71865-72593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT guaA (PRK00074), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-Retrons, HTH_XRE (smart00530), TrbK_RP4 (TIGR04359), TrbL_P (TIGR02783), AAA_15 (pfam13175)

Seq: LPVL01000018.1 Vibrio parahaemolyticus strain C146 contig25, whole genome shotgun sequence (467525 bp)
Overview 1 RT 1: 141448-145063 bp Neighborhood of RT #1 [141448, 145063] AlaE INT_C_like_1 RVT-Retrons HTH_XRE Feature: gene Location: 141448-141897 bp Ori: KYX67229.1 Feature: domain Description: AlaE Location: 141472-141874 bp Feature: domain Description: AlaE Location: 14 14 72-14 1874 bp Feature: gene Location: 142214-143395 bp Ori: KYX67230.1 Feature: domain Description: INT_C_like_1 Location: 142781-143285 bp Feature: domain Description: INT_C_like_1 Location: 14 2781-14 3285 bp Feature: gene Location: 143373-144512 bp Ori: KYX67231.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 143514-144051 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 3514 -14 4 051 bp Feature: gene Location: 144505-144780 bp Ori: KYX67232.1 Feature: domain Description: HTH_XRE Location: 144520-144688 bp Feature: domain Description: HTH_XRE Location: 14 4 520-14 4 688 bp Feature: gene Location: 144845-145063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlaE (pfam06610), INT_C_like_1 (cd01184), RVT-Retrons, HTH_XRE (smart00530)