myRT

myRT report for GCA_001609635.1_ASM160963v1

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Seq: LQCU01000025.1 Vibrio parahaemolyticus strain A5Z905 contig31, whole genome shotgun sequence (261316 bp)
Overview 1 RT 1: 158266-166153 bp Neighborhood of RT #1 [158266, 166153] COG0610 DUF45 RVT-UG2 PinE Feature: gene Location: 158266-161637 bp Ori: KYX78235.1 Feature: domain Description: COG0610 Location: 158308-161389 bp Feature: domain Description: COG061 0 Location: 1 58308-1 61 389 bp Feature: gene Location: 161669-162370 bp Ori: KYX78236.1 Feature: domain Description: DUF45 Location: 161741-162350 bp Feature: domain Description: DUF45 Location: 1 61 741 -1 62350 bp Feature: gene Location: 163009-164319 bp Ori: KYX78237.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 163210-164023 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 6321 0-1 64023 bp Feature: gene Location: 164645-165235 bp Ori: KYX78319.1 Feature: domain Description: PinE Location: 164654-165215 bp Feature: domain Description: PinE Location: 1 64654-1 6521 5 bp Feature: gene Location: 165866-166153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-UG2, PinE (COG1961)

Seq: LQCU01000013.1 Vibrio parahaemolyticus strain A5Z905 contig20, whole genome shotgun sequence (635987 bp)
Overview 1 RT 1: 329301-336164 bp Neighborhood of RT #1 [329301, 336187] PRK15030 Tar RVT-Retrons PinE Feature: gene Location: 329301-330440 bp Ori: KYX83396.1 Feature: domain Description: PRK15030 Location: 329322-330423 bp Feature: domain Description: PRK15030 Location: 32 932 2 -33042 3 bp Feature: gene Location: 330865-332502 bp Ori: KYX83397.1 Feature: domain Description: Tar Location: 331294-332500 bp Feature: domain Description: Tar Location: 3312 94-332 500 bp Feature: gene Location: 333415-334617 bp Ori: KYX83398.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 333559-334144 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 333559-334144 bp Feature: gene Location: 334627-335346 bp Feature: gene Location: 335579-336187 bp Ori: KYX83400.1 Feature: domain Description: PinE Location: 335591-336164 bp Feature: domain Description: PinE Location: 335591-336164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15030 (multidrug efflux RND transporter periplasmic adaptor subunit AcrA), Tar (COG0840), RVT-Retrons, PinE (COG1961)