myRT

myRT report for GCA_001609745.1_ASM160974v1

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Seq: LODB01000420.1 Escherichia coli strain STEC 545 STEC-545_contig_50, whole genome shotgun sequence (26693 bp)
Overview 1 RT 1: 6979-12293 bp Neighborhood of RT #1 [6979, 12298] RVT-GII RVT-GII GIIM LacI PBP1_GntR PtsN Feature: gene Location: 6979-7323 bp Feature: gene Location: 7533-7871 bp Feature: gene Location: 8768-9202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8960-9176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8960-91 76 bp Feature: gene Location: 9292-9828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9298-9586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9298-9586 bp Feature: domain Description: GIIM Note: maturase Location: 9634-9826 bp Feature: domain Description: GIIM Note: maturase Location: 9634-9826 bp Feature: gene Location: 10553-11584 bp Feature: domain Description: LacI Location: 10595-10730 bp Feature: domain Description: LacI Location: 1 0595-1 0730 bp Feature: domain Description: PBP1_GntR Location: 10769-11579 bp Feature: domain Description: PBP1 _GntR Location: 1 0769-1 1 579 bp Feature: gene Location: 11855-12298 bp Feature: domain Description: PtsN Location: 11858-12293 bp Feature: domain Description: PtsN Location: 1 1 858-1 2293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388), PtsN (COG1762)

Seq: LODB01000418.1 Escherichia coli strain STEC 545 STEC-545_contig_49, whole genome shotgun sequence (62563 bp)
Overview 1 RT 1: 22845-27059 bp Neighborhood of RT #1 [22845, 27841] HTH_XRE RVT-Retrons PRK13889 CoiA Feature: gene Location: 22845-23060 bp Feature: gene Location: 23151-23432 bp Feature: domain Description: HTH_XRE Location: 23166-23331 bp Feature: domain Description: HTH_XRE Location: 2 3166-2 3331 bp Feature: gene Location: 23425-24525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23566-24118 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3566-2 4118 bp Feature: gene Location: 24602-26104 bp Feature: domain Description: PRK13889 Location: 24605-25184 bp Feature: domain Description: PRK13889 Location: 2 4605-2 5184 bp Feature: gene Location: 26840-27841 bp Feature: domain Description: CoiA Location: 26921-27059 bp Feature: domain Description: CoiA Location: 2 692 1-2 7059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), CoiA (pfam06054)