myRT

myRT report for GCA_001610435.1_ASM161043v1

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Seq: LNBB01000106.1 Mycobacterium avium subsp. hominissuis strain MAH-P-0913 MAH-P-0913_S6CLC_contig_125, whole genome shotgun sequence (8312 bp)
Overview 1 RT 1: 3208-8304 bp Neighborhood of RT #1 [3208, 8309] DEDD_Tnp_IS110 Transposase_20 RVT_N RVT-GII GIIM Transposase_mut Feature: gene Location: 3208-3531 bp Feature: gene Location: 3858-5102 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3876-4347 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 3876-4347 bp Feature: domain Description: Transposase_20 Location: 4689-4941 bp Feature: domain Description: Transposase_20 Location: 4689-4941 bp Feature: gene Location: 5800-7602 bp Feature: RT Description: RVT_N Location: 5845-6082 bp Feature: RT Description: RVT_N Location: 5845-6082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6142-6802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 42-6802 bp Feature: domain Description: GIIM Note: maturase Location: 6871-7102 bp Feature: domain Description: GIIM Note: maturase Location: 6871 -71 02 bp Feature: gene Location: 7787-7945 bp Feature: gene Location: 7869-8309 bp Feature: domain Description: Transposase_mut Location: 7941-8304 bp Feature: domain Description: Transposase_mut Location: 7941 -8304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Transposase_mut (pfam00872)

Seq: LNBB01000156.1 Mycobacterium avium subsp. hominissuis strain MAH-P-0913 MAH-P-0913_S6CLC_contig_222, whole genome shotgun sequence (2205 bp)
Overview 1 RT 1: 136-2153 bp Neighborhood of RT #1 [136, 2153] RVT-GII GIIM Feature: gene Location: 136-1647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517-12 01 bp Feature: domain Description: GIIM Note: maturase Location: 1276-1492 bp Feature: domain Description: GIIM Note: maturase Location: 12 76-1492 bp Feature: gene Location: 2025-2153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LNBB01000073.1 Mycobacterium avium subsp. hominissuis strain MAH-P-0913 MAH-P-0913_S6CLC_contig_85, whole genome shotgun sequence (19006 bp)
Overview 1 RT 1: 11923-15453 bp Neighborhood of RT #1 [11923, 15453] TetR_N TetR_C_35 rve RVT-GII GIIM Feature: gene Location: 11923-12552 bp Feature: domain Description: TetR_N Location: 11980-12112 bp Feature: domain Description: TetR_N Location: 11980-12112 bp Feature: domain Description: TetR_C_35 Location: 12181-12514 bp Feature: domain Description: TetR_C_3 5 Location: 12181-12514 bp Feature: gene Location: 12844-13125 bp Feature: domain Description: rve Location: 12850-12970 bp Feature: domain Description: rve Location: 12850-12970 bp Feature: gene Location: 13260-14708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13578-14265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 578-14265 bp Feature: domain Description: GIIM Note: maturase Location: 14340-14535 bp Feature: domain Description: GIIM Note: maturase Location: 143 40-1453 5 bp Feature: gene Location: 14711-14869 bp Feature: gene Location: 15238-15453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_N (pfam00440), TetR_C_35 (pfam18556), rve (pfam00665), RVT-GII, GIIM (pfam08388)