myRT

myRT report for GCA_001611705.1_ASM161170v1

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Seq: LNZS01000039.1 Escherichia coli strain 1099F 1099F_Contig_22, whole genome shotgun sequence (77292 bp)
Overview 1 RT 1: 1654-5012 bp Neighborhood of RT #1 [1654, 5032] RVT-Retrons PRK09678 Psu Feature: gene Location: 1654-2586 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1756-2350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 756-2350 bp Feature: gene Location: 4203-4475 bp Feature: domain Description: PRK09678 Location: 4212-4368 bp Feature: domain Description: PRK09678 Location: 421 2-4368 bp Feature: gene Location: 4481-5032 bp Feature: domain Description: Psu Location: 4502-5012 bp Feature: domain Description: Psu Location: 4502-501 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: LNZS01000040.1 Escherichia coli strain 1099F 1099F_Contig_23, whole genome shotgun sequence (61206 bp)
Overview 1 RT 1: 37902-42257 bp Neighborhood of RT #1 [37902, 42257] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 37902-38135 bp Feature: domain Description: DUF905 Location: 37932-38130 bp Feature: domain Description: DUF905 Location: 37932 -38130 bp Feature: gene Location: 38203-38700 bp Feature: domain Description: PRK13732 Location: 38206-38698 bp Feature: domain Description: PRK13732 Location: 382 06-38698 bp Feature: gene Location: 38850-40751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39117-39948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39117-39948 bp Feature: domain Description: Intron_maturas2 Location: 40062-40320 bp Feature: domain Description: Intron_maturas2 Location: 40062 -4032 0 bp Feature: domain Description: HNHc Note: nucleases Location: 40494-40656 bp Feature: domain Description: HNHc Note: nucleases Location: 40494-40656 bp Feature: gene Location: 41429-41635 bp Feature: gene Location: 42045-42257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)