myRT

myRT report for GCA_001611725.1_ASM161172v1

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Seq: LNZU01000075.1 Escherichia coli strain 1326F 1326F_Contig_42, whole genome shotgun sequence (26541 bp)
Overview 1 RT 1: 22593-26410 bp Neighborhood of RT #1 [22593, 26541] YesN YesN YesM RVT-GII GIIM RVT-GII Feature: gene Location: 22593-23648 bp Ori: KYZ93083.1 Feature: domain Description: YesN Location: 22596-22995 bp Feature: domain Description: YesN Location: 22596-22995 bp Feature: domain Description: YesN Location: 23328-23625 bp Feature: domain Description: YesN Location: 23328-23625 bp Feature: gene Location: 23665-24894 bp Ori: KYZ93087.1 Feature: domain Description: YesM Location: 24145-24886 bp Feature: domain Description: YesM Location: 241 45-24886 bp Feature: gene Location: 25543-26064 bp Ori: KYZ93084.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25549-25831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25549-25831 bp Feature: domain Description: GIIM Note: maturase Location: 25879-26059 bp Feature: domain Description: GIIM Note: maturase Location: 25879-26059 bp Feature: gene Location: 26092-26541 bp Ori: KYZ93085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26332-26410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26332-2641 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: LNZU01000095.1 Escherichia coli strain 1326F 1326F_Contig_60, whole genome shotgun sequence (15061 bp)
Overview 1 RT 1: 1-2513 bp Neighborhood of RT #1 [1, 2527] RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 1-357 bp Ori: KYZ90790.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217-319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 17-319 bp Feature: gene Location: 889-1911 bp Ori: KYZ90798.1 Feature: domain Description: Asparaginase_2 Location: 970-1903 bp Feature: domain Description: Asparaginase_2 Location: 970-1903 bp Feature: gene Location: 2249-2527 bp Ori: KYZ90791.1 Feature: domain Description: DUF5339 Location: 2312-2513 bp Feature: domain Description: DUF5339 Location: 2 312 -2 513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274)

Seq: LNZU01000109.1 Escherichia coli strain 1326F 1326F_Contig_73, whole genome shotgun sequence (7373 bp)
Overview 1 RT 1: 185-3821 bp Neighborhood of RT #1 [185, 3826] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 185-304 bp Feature: gene Location: 982-2883 bp Ori: KYZ89936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249-2080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249-2080 bp Feature: domain Description: Intron_maturas2 Location: 2194-2452 bp Feature: domain Description: Intron_maturas2 Location: 2194-2452 bp Feature: domain Description: HNHc Note: nucleases Location: 2626-2788 bp Feature: domain Description: HNHc Note: nucleases Location: 2626-2788 bp Feature: gene Location: 3033-3530 bp Ori: KYZ89937.1 Feature: domain Description: PRK13732 Location: 3036-3528 bp Feature: domain Description: PRK13 73 2 Location: 3 03 6-3 528 bp Feature: gene Location: 3593-3826 bp Ori: KYZ89938.1 Feature: domain Description: DUF905 Location: 3623-3821 bp Feature: domain Description: DUF905 Location: 3 623 -3 821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: LNZU01000055.1 Escherichia coli strain 1326F 1326F_Contig_24, whole genome shotgun sequence (56539 bp)
Overview 1 RT 1: 41645-45527 bp Neighborhood of RT #1 [41645, 45532] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 41645-42361 bp Ori: KYZ97170.1 Gene: rph Feature: domain Description: rph Location: 41648-42356 bp Feature: domain Description: rph Location: 4 164 8-4 2356 bp Feature: gene Location: 42427-43068 bp Ori: KYZ97171.1 Gene: pyrE Feature: domain Description: pyrE Location: 42430-43063 bp Feature: domain Description: pyrE Location: 4 24 30-4 3063 bp Feature: gene Location: 43366-44325 bp Ori: KYZ97172.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43501-44050 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 3501-4 4 050 bp Feature: gene Location: 44371-44967 bp Ori: KYZ97173.1 Gene: slmA Feature: domain Description: slmA Location: 44377-44953 bp Feature: domain Description: slmA Location: 4 4 377-4 4 953 bp Feature: gene Location: 45074-45532 bp Ori: KYZ97174.1 Feature: domain Description: dut Location: 45080-45527 bp Feature: domain Description: dut Location: 4 5080-4 5527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)