myRT

myRT report for GCA_001612745.1_ASM161274v1

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Seq: BDBA01000134.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON07801, strain: NBRC 102102, whole genome shotgun sequence (22569 bp)
Overview 1 RT 1: 2442-5893 bp Neighborhood of RT #1 [2442, 5893] RVT-GII Phage_int_SAM_1 INT_RitA_C_like Feature: gene Location: 2442-2624 bp Feature: gene Location: 2747-2893 bp Feature: gene Location: 3559-4230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3775-4162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3775-41 62 bp Feature: gene Location: 4329-5558 bp Feature: domain Description: Phage_int_SAM_1 Location: 4668-4902 bp Feature: domain Description: Phage_int_SAM_1 Location: 4668-4902 bp Feature: domain Description: INT_RitA_C_like Location: 4986-5523 bp Feature: domain Description: INT_RitA_C_like Location: 4986-5523 bp Feature: gene Location: 5555-5893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188)

Seq: BDBA01000135.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON07802, strain: NBRC 102102, whole genome shotgun sequence (11582 bp)
Overview 1 RT 1: 8439-11423 bp Neighborhood of RT #1 [8439, 11467] COG3464 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 8439-9245 bp Feature: domain Description: COG3464 Location: 8535-9150 bp Feature: domain Description: COG3464 Location: 8535-9150 bp Feature: gene Location: 9597-9989 bp Feature: gene Location: 9980-11467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9983-10742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9983-10742 bp Feature: domain Description: Intron_maturas2 Location: 10859-11078 bp Feature: domain Description: Intron_maturas2 Location: 10859-11078 bp Feature: domain Description: HNHc Note: nucleases Location: 11246-11423 bp Feature: domain Description: HNHc Note: nucleases Location: 112 46-1142 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BDBA01000319.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON22101, strain: NBRC 102102, whole genome shotgun sequence (6973 bp)
Overview 1 RT 1: 3394-6617 bp Neighborhood of RT #1 [3394, 6658] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3394-3924 bp Feature: gene Location: 3963-4436 bp Feature: gene Location: 4868-6658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5138-5927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 513 8-5927 bp Feature: domain Description: Intron_maturas2 Location: 6047-6263 bp Feature: domain Description: Intron_maturas2 Location: 6047-6263 bp Feature: domain Description: HNHc Note: nucleases Location: 6431-6617 bp Feature: domain Description: HNHc Note: nucleases Location: 643 1-6617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BDBA01000320.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON22201, strain: NBRC 102102, whole genome shotgun sequence (6953 bp)
Overview 1 RT 1: 1585-5460 bp Neighborhood of RT #1 [1585, 5789] DDE_Tnp_1_4 RVT-GII GIIM RVT-GII UbiH Feature: gene Location: 1585-1941 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1654-1933 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1654 -1933 bp Feature: gene Location: 1989-2201 bp Feature: gene Location: 2265-2993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2322-2562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2322-2562 bp Feature: domain Description: GIIM Note: maturase Location: 2649-2865 bp Feature: domain Description: GIIM Note: maturase Location: 264 9-2865 bp Feature: gene Location: 2902-3663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3238-3634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3238-3634 bp Feature: gene Location: 3786-4022 bp Feature: gene Location: 4395-5789 bp Feature: domain Description: UbiH Location: 4425-5460 bp Feature: domain Description: UbiH Location: 4 4 25-54 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII, GIIM (pfam08388), UbiH (TIGR01984)

Seq: BDBA01000330.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON23201, strain: NBRC 102102, whole genome shotgun sequence (5527 bp)
Overview 1 RT 1: 2-4890 bp Neighborhood of RT #1 [2, 5516] HTH_32 DDE_3 RVT_N RVT-GII RVT-GII GIIM RVT-GII Intron_maturas2 Feature: gene Location: 2-676 bp Feature: domain Description: HTH_32 Location: 5-173 bp Feature: domain Description: HTH_32 Location: 5 -173 bp Feature: domain Description: DDE_3 Location: 293-656 bp Feature: domain Description: DDE_3 Location: 293-65 6 bp Feature: gene Location: 1331-2011 bp Feature: domain Description: RVT_N Location: 1382-1622 bp Feature: domain Description: RVT_N Location: 1382-1622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1679-1958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1679-195 8 bp Feature: gene Location: 1977-3080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1983-2337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1983-2337 bp Feature: domain Description: GIIM Note: maturase Location: 2394-2625 bp Feature: domain Description: GIIM Note: maturase Location: 2394-2625 bp Feature: gene Location: 3096-3341 bp Feature: gene Location: 3358-3513 bp Feature: gene Location: 3498-5516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3759-4557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375 9-45 5 7 bp Feature: domain Description: Intron_maturas2 Location: 4668-4890 bp Feature: domain Description: Intron_maturas2 Location: 4668-4890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), DDE_3 (pfam13358), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Intron_maturas2 (pfam01348)

Seq: BDBA01000341.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON24401, strain: NBRC 102102, whole genome shotgun sequence (4734 bp)
Overview 1 RT 1: 307-3553 bp Neighborhood of RT #1 [307, 3738] PHA02517 RVT-GII GIIM HTH_32 PHA02517 Feature: gene Location: 307-1227 bp Feature: domain Description: PHA02517 Location: 382-1180 bp Feature: domain Description: PHA02517 Location: 382-1180 bp Feature: gene Location: 1428-1802 bp Feature: gene Location: 2118-2717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2130-2457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2130-2457 bp Feature: domain Description: GIIM Note: maturase Location: 2532-2703 bp Feature: domain Description: GIIM Note: maturase Location: 2532-2703 bp Feature: gene Location: 2724-2852 bp Feature: gene Location: 3061-3738 bp Feature: domain Description: HTH_32 Location: 3178-3355 bp Feature: domain Description: HTH_32 Location: 3178-3355 bp Feature: domain Description: PHA02517 Location: 3379-3553 bp Feature: domain Description: PHA02517 Location: 3379-3553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565)

Seq: BDBA01000348.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON25101, strain: NBRC 102102, whole genome shotgun sequence (4125 bp)
Overview 1 RT 1: 141-3860 bp Neighborhood of RT #1 [141, 3904] DDE_Tnp_1_4 DDE_Tnp_1_2 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 141-1523 bp Feature: domain Description: DDE_Tnp_1_4 Location: 177-1497 bp Feature: domain Description: DDE_Tnp_1_4 Location: 17 7 -1497 bp Feature: gene Location: 1666-1884 bp Feature: domain Description: DDE_Tnp_1_2 Location: 1699-1855 bp Feature: domain Description: DDE_Tnp_1_2 Location: 1699-1855 bp Feature: gene Location: 1901-3904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2384-3179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2384-317 9 bp Feature: domain Description: Intron_maturas2 Location: 3281-3512 bp Feature: domain Description: Intron_maturas2 Location: 3281-3512 bp Feature: domain Description: HNHc Note: nucleases Location: 3704-3860 bp Feature: domain Description: HNHc Note: nucleases Location: 37 04-3860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), DDE_Tnp_1_2 (pfam13586), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BDBA01000387.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON28601, strain: NBRC 102102, whole genome shotgun sequence (2473 bp)
Overview 1 RT 1: 37-1822 bp Neighborhood of RT #1 [37, 1833] RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 37-1248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-48 1 bp Feature: domain Description: GIIM Note: maturase Location: 538-772 bp Feature: domain Description: GIIM Note: maturase Location: 538 -772 bp Feature: gene Location: 1261-1833 bp Feature: domain Description: RVT_N Location: 1345-1582 bp Feature: domain Description: RVT_N Location: 1345-158 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1639-1822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1639-18 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: BDBA01000393.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON29101, strain: NBRC 102102, whole genome shotgun sequence (2205 bp)
Overview 1 RT 1: 1-1927 bp Neighborhood of RT #1 [1, 1927] PHA02517 RVT-GII GIIM Feature: gene Location: 1-276 bp Feature: domain Description: PHA02517 Location: 25-220 bp Feature: domain Description: PHA02517 Location: 25-220 bp Feature: gene Location: 362-1639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578-1235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1316-1541 bp Feature: domain Description: GIIM Note: maturase Location: 1316-1541 bp Feature: gene Location: 1790-1927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: BDBA01000428.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON90514, strain: NBRC 102102, whole genome shotgun sequence (1558 bp)
Overview 1 RT 1: 222-1498 bp Neighborhood of RT #1 [222, 1557] RVT-GII RVT-GII Feature: gene Location: 222-1235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1134 bp Feature: gene Location: 1267-1557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1306-1498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1306-1498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDBA01000432.1 Nocardia amamiensis NBRC 102102 DNA, contig: NA4_CON90518, strain: NBRC 102102, whole genome shotgun sequence (1522 bp)
Overview 1 RT 1: 1-973 bp Neighborhood of RT #1 [1, 1521] RVT-GII Feature: gene Location: 1-1521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII