myRT

myRT report for GCA_001613065.1_ASM161306v1

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Seq: BDBQ01000001.1 Nocardia miyunensis NBRC 108239 DNA, contig: NM2_CON00101, strain: NBRC 108239, whole genome shotgun sequence (540353 bp)
Overview 1 RT 1: 118655-123968 bp 2 RT 2: 524889-530746 bp Neighborhood of RT #1 [118655, 123973] Ga5DH-like_SDR_c DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM COG2159 Neighborhood of RT #2 [524889, 530754] PotE HTH_28 DDE_3 RVT-GII GIIM AcrR GatA GatA Feature: gene Location: 118655-119404 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 118670-119390 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 1 1 8670-1 1 9390 bp Feature: gene Location: 119428-120657 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 119464-119911 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 1 9464-1 1 991 1 bp Feature: domain Description: Transposase_20 Location: 120256-120451 bp Feature: domain Description: Transposase_20 Location: 1 20256-1 20451 bp Feature: gene Location: 120751-122181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121072-121759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 072-1 21 759 bp Feature: domain Description: GIIM Note: maturase Location: 121831-122059 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 831 -1 22059 bp Feature: gene Location: 122267-122401 bp Feature: gene Location: 123209-123973 bp Feature: domain Description: COG2159 Location: 123269-123968 bp Feature: domain Description: COG21 59 Location: 1 23269-1 23968 bp Feature: gene Location: 524889-526283 bp Feature: domain Description: PotE Location: 524895-526224 bp Feature: domain Description: PotE Location: 524895-526224 bp Feature: gene Location: 526865-527689 bp Feature: domain Description: HTH_28 Location: 526919-527048 bp Feature: domain Description: HTH_28 Location: 52691 9-527048 bp Feature: domain Description: DDE_3 Location: 527165-527594 bp Feature: domain Description: DDE_3 Location: 5271 65-527594 bp Feature: gene Location: 527745-528317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527802-527931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527802-527931 bp Feature: domain Description: GIIM Note: maturase Location: 528012-528234 bp Feature: domain Description: GIIM Note: maturase Location: 52801 2-528234 bp Feature: gene Location: 528518-529222 bp Feature: domain Description: AcrR Location: 528608-529136 bp Feature: domain Description: AcrR Location: 528608-5291 36 bp Feature: gene Location: 529345-530754 bp Feature: domain Description: GatA Location: 529357-530290 bp Feature: domain Description: GatA Location: 529357-530290 bp Feature: domain Description: GatA Location: 530398-530746 bp Feature: domain Description: GatA Location: 530398-530746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ga5DH-like_SDR_c (cd05347), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), COG2159 (Predicted metal-dependent hydrolase, TIM-barrel fold ), PotE (COG0531), HTH_28 (pfam13518), DDE_3 (pfam13358), AcrR (COG1309)
GatA (COG0154)

Seq: BDBQ01000163.1 Nocardia miyunensis NBRC 108239 DNA, contig: NM2_CON12201, strain: NBRC 108239, whole genome shotgun sequence (10182 bp)
Overview 1 RT 1: 2816-5325 bp Neighborhood of RT #1 [2816, 5363] RVT-GII GIIM PRK09645 Feature: gene Location: 2816-2947 bp Feature: gene Location: 3163-3570 bp Feature: gene Location: 3548-4309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3899-4016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3899-4016 bp Feature: domain Description: GIIM Note: maturase Location: 4088-4292 bp Feature: domain Description: GIIM Note: maturase Location: 4088-42 92 bp Feature: gene Location: 4349-4687 bp Feature: gene Location: 4782-5363 bp Feature: domain Description: PRK09645 Location: 4851-5325 bp Feature: domain Description: PRK09645 Location: 4851-532 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09645 (ECF RNA polymerase sigma factor SigL)

Seq: BDBQ01000167.1 Nocardia miyunensis NBRC 108239 DNA, contig: NM2_CON12601, strain: NBRC 108239, whole genome shotgun sequence (7563 bp)
Overview 1 RT 1: 815-5358 bp Neighborhood of RT #1 [815, 5358] PRK05901 RVT-GII Intron_maturas2 HNHc COG3293 COG3293 Feature: gene Location: 815-1624 bp Feature: domain Description: PRK05901 Location: 863-1622 bp Feature: domain Description: PRK05901 Location: 863 -1622 bp Feature: gene Location: 1731-2138 bp Feature: gene Location: 1969-3750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2230-3025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223 0-3 025 bp Feature: domain Description: Intron_maturas2 Location: 3127-3355 bp Feature: domain Description: Intron_maturas2 Location: 3 127-3 3 55 bp Feature: domain Description: HNHc Note: nucleases Location: 3550-3706 bp Feature: domain Description: HNHc Note: nucleases Location: 3 550-3 706 bp Feature: gene Location: 4286-4960 bp Feature: domain Description: COG3293 Location: 4301-4637 bp Feature: domain Description: COG3 293 Location: 43 01-463 7 bp Feature: domain Description: COG3293 Location: 4685-4958 bp Feature: domain Description: COG3 293 Location: 4685-4958 bp Feature: gene Location: 5128-5358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05901 (RNA polymerase sigma factor; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), COG3293 (Transposase )

Seq: BDBQ01000178.1 Nocardia miyunensis NBRC 108239 DNA, contig: NM2_CON13701, strain: NBRC 108239, whole genome shotgun sequence (2433 bp)
Overview 1 RT 1: 109-1864 bp Neighborhood of RT #1 [109, 1902] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 109-1902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1165 bp Feature: domain Description: Intron_maturas2 Location: 1303-1525 bp Feature: domain Description: Intron_maturas2 Location: 1303-1525 bp Feature: domain Description: HNHc Note: nucleases Location: 1702-1864 bp Feature: domain Description: HNHc Note: nucleases Location: 1702-1864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)